Input parameters:

  Query = CsaV3_6G022650 (Len=629)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CsaV3_6G022650, Len=629):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MGFSNIRDLLTSFSPDLHFFAISSGDGRIKIWDTLKGQIQTEFADFFTSDSTSILTKPEKGHLSVDYKCMKWLSLEKKRK 80  
WD40-rpts      (______________WD 1_____________)                        (___________________WD 

Query       81 RKRQCLLLLLGTGSGDVLALDVAAGELKWKISDCHPGGVASISFPTHGSCIYTAGADGMLCEINSLTGNLLRKFKASTKA 160 
WD40-rpts      2___________________)(___________________WD 3__________________)   (____________

Query      161 ISCISVSPDGKIIATAASQVKIFNCSNHKKIQKFSGHPGAVRCMVFTEDGRYILSSAVGERYIVVWSVDGGKEQSASCVL 240 
WD40-rpts      ____WD 4_______________)   (_________________WD 5_________________)       (_____

Query      241 AMEHPAIFVDSRCSNDGGDETALYILAISEIGACYLWYGQNLEELRTAKPTKILMSGNDIFSKSKKRAIPAIYAAKLQGV 320 
WD40-rpts      ______________WD 6___________________)   (_________________WD 7_________________

Query      321 PKSGSGQVFLAHGLLVKPSFQSVLVQSGTDINLNSSNEGILLPSQSIGKSKKGLDVQGGVVALDRANAEDALRPIPKIFD 400 
WD40-rpts      )               (_________________WD 8________________)   (_________________WD 9

Query      401 SQEKSTLYQDLQVDRSDVMTQLVDSGSRLEDDVGVKDSAAVCMEDQLRSLGILHNTDDHMLESILKLAISKGIDLEANIS 480 
WD40-rpts      ________________)                                                               

Query      481 QKKLREAVLSLAPGDAYKLLGNLVNIWQSRLHCGKNVLPWIYSLLLNHSQHILSQEQSAQMLDSLFKITKSKETAVQPLL 560 
WD40-rpts                                                                                      

Query      561 QLSGRLQLVLAQIERTSTNKTKQTIQDSLEIAGSESSDDDEDEDEDDEVDDVLYGEEENESELSSDDEK 629 
WD40-rpts                                                                           

9 WD40-repeats found in QUERY=CsaV3_6G022650 (Len=629):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-33       6.10  366.78  0.00071       32.5%     47.86
  WD 2:  Seg  6    58-101      4.93  318.21  0.00320       12.5%     38.96
  WD 3:  Seg  9   102-144      7.80  436.79  8.1e-05       22.5%     53.51
  WD 4:  Seg 13   148-184      7.11  408.26  0.00020       27.5%     51.76
  WD 5:  Seg 17   188-227      7.45  422.46  0.00013       30.0%     57.20
  WD 6:  Seg 21   235-278      5.17  328.07  0.00236       20.0%     52.65
  WD 7:  Seg 25   282-321      3.16  245.25  0.03041       20.0%     35.73
  WD 8:  Seg 29   337-375      6.25  372.65  0.00059       17.5%     51.58
  WD 9:  Seg 33   379-417      6.56  385.45  0.00040       10.0%     27.85

Multiple sequence alignment of 9 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-33     MG--------------FSNIRDL-LTSFSPDLH-----F-FAISSGDGRIKIWD
   WD 2   58-101    PEKGHLS---VDYKCMKWLSLEK-KRKRKRQCL-----L-LLLGTGSGDVLALD
   WD 3  102-144    VA----AGELKWKISDCHPGGVA-SISFPTHGS-----C-IYTAGADGMLCEIN
   WD 4  148-184    -G----N---LLRKFKASTKAIS-CISVSPDGK-----I-IATAA--SQVKIFN
   WD 5  188-227    -H----K---KIQKFSGHPGAVR-CMVFTEDGR-----YILSSAVGERYIVVWS
   WD 6  235-278    -S----A---SCVLAMEHPAIFV-DSRCSNDGGDETALY-ILAISEIGACYLWY
   WD 7  282-321    -L----E---ELRTAKPTKILMSGNDIFSKSKK-----R-AIPAIYAAKLQGVP
   WD 8  337-375    -K----P---SFQSVLVQSGTDI-NLNSSNEGI-----L-LPSQSIGKSKKGLD
   WD 9  379-417    -G----V---VALDRANAEDALR-PIPKIFDSQ-----E-KSTLYQDLQVDRSD

   WD40 Template    TG----E---CLRTLSGHTSGVT-SVSFSPDGK-----R-LVSGSEDGTIKVWD