Input parameters:

  Query = CsaV3_6G040110 (Len=941)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CsaV3_6G040110, Len=941):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MVKAYLRYEPAAAFGVIVSLDSNITYDSSGKHLIAPALEKVGVWNVRQGVCTKNLTPTQSSPGPSLAVTAVTSAPSLLIA 80  
WD40-rpts            (_________________WD 1________________)          (________________WD 2____

Query       81 SGYADGSIRIWDADKGTCETTLHGHKGAVTVLRYNKLGSMLASGSKDNDIILWDAVGETGLFRLRGHRDQVTDLVFLDSS 160 
WD40-rpts      ___________)   (_________________WD 3________________)   (_________________WD 4_

Query      161 KKLVSSSKDKFLRVWNLETQHCMQIVGGHHSEIWSMDIDPDERFLVTGSADQELRFFTTKHDLVAGKSVDESNTNGTKDS 240 
WD40-rpts      _______________)   (_________________WD 5________________)(_____________WD 6____

Query      241 DQSTQSKWEVLKQFGEITRQSKDRVATVRFNKSGNLLACQVAGKTVELFNVLDETEAKRKAKRRINRKKGKKAGKGEQDV 320 
WD40-rpts      ________)  (_________________WD 7________________)           (_________________W

Query      321 TENGESNHTTGEEGSGSMITVADVFKLLHTIRASKKICSISFCPLIPKNSISTVALSLNNNLLEFYSVGSSAVTKLHCIE 400 
WD40-rpts      D 8________________)   (___________________WD 9___________________)(____________

Query      401 LQGHRSDIRSVTLSSDNSLLMSTSHNAVKIWNPSTGSCLRTIDSGYGLCGLIIPQNKYALVGNKSGAIEILDIASGSCVE 480 
WD40-rpts      ________WD10___________________)   (________________WD11_______________)   (____

Query      481 VLEAHGGSIRSIVALPYENGFVTASADHDIKFWEYHIEKKSEQDPKTLSVTFVRSMKMNDDVLVAAISPDGKYLAAALLD 560 
WD40-rpts      _____________WD12________________)     (_____________________WD13_______________

Query      561 STVKVFFMDTFKVFRTLYGHKLPVLCMDISSDGDLLVTGSADKNLKIWGLDFGDCHKSIFAHSDSVMAVQFVRKTHYVFS 640 
WD40-rpts      ______)   (_________________WD14________________)   (_________________WD15______

Query      641 VGKDRLVKYWDADKFELLLTLEGHHADVWCLAISNRGDFLVTGSHDRSIRRWDRTEEPFFIEEEKEKRLEEMFEADLDNA 720 
WD40-rpts      __________)   (_________________WD16________________)                           

Query      721 FENKHMPTEEVPEEGVVALAGKKTQETISATDLIIDALDMAEAEAKRIAEHEEEKRNGKASHFEPNALMLGLSPSDYVLR 800 
WD40-rpts                                    (________________________WD17_____________________

Query      801 ALSNVHTNDLEQTLLALPFSDSLKLLSYLKDWTSKPDKVELICRISTVLLQTHHNQLVTTPAARPALTILRDILYARIKE 880 
WD40-rpts      __)                                                                             

Query      881 CKDTIGFNLAAMDHLKQLMAMRSDALFQDAKSKLQEIRSQNSKRLEMRTDTRQVKRKKKNK 941 
WD40-rpts                                                                   

17 WD40-repeats found in QUERY=CsaV3_6G040110 (Len=941):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     7-45       5.07  323.95  0.00268       17.5%     50.43
  WD 2:  Seg  6    56-92       6.49  382.84  0.00043       32.5%     39.86
  WD 3:  Seg  9    96-134      9.72  516.29  6.8e-06       42.5%     58.60
  WD 4:  Seg 13   138-176      9.02  487.18  1.7e-05       37.5%     58.81
  WD 5:  Seg 17   180-218      8.67  472.78  2.6e-05       30.0%     58.36
  WD 6:  Seg 21   219-249      3.70  267.48  0.01537       15.0%     29.27
  WD 7:  Seg 23   252-290      6.86  398.09  0.00027       15.0%     54.09
  WD 8:  Seg 27   302-340      6.26  373.10  0.00058       12.5%     39.33
  WD 9:  Seg 31   344-387      5.05  323.40  0.00273       12.5%     53.87
  WD10:  Seg 35   388-432      6.77  394.13  0.00030       35.0%     56.31
  WD11:  Seg 39   436-472      6.28  374.17  0.00056       27.5%     55.72
  WD12:  Seg 43   476-514      9.04  488.17  1.6e-05       30.0%     57.09
  WD13:  Seg 47   520-567      7.12  408.72  0.00019       30.0%     56.03
  WD14:  Seg 51   571-609      9.45  504.97  9.7e-06       40.0%     56.46
  WD15:  Seg 55   613-651      8.76  476.41  2.4e-05       27.5%     56.17
  WD16:  Seg 59   655-693      9.34  500.31  1.1e-05       42.5%     56.96
  WD17:  Seg 67   751-803      5.56  344.21  0.00143       15.0%     49.70

Multiple sequence alignment of 17 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    7-45     RYE--------PAAAFGVI-------------VSLDSNITYDS-----SGKHLIAPALE-KVGVWN
   WD 2   56-92     TP----------TQSSPGP-------------SLAVTAVTSAP------SLLIASGYADGSIRIWD
   WD 3   96-134    -GT--------CETTLHGH-------------KGAVTVLRYNK-----LGSMLASGSKDNDIILWD
   WD 4  138-176    -ET--------GLFRLRGH-------------RDQVTDLVFLD-----SSKKLVSSSKDKFLRVWN
   WD 5  180-218    -QH--------CMQIVGGH-------------HSEIWSMDIDP-----DERFLVTGSADQELRFFT
   WD 6  219-249    T-----------------K-------------HDLVAGKSVDE-----SNTNGTKDSDQSTQSKWE
   WD 7  252-290    -KQ--------FGEITRQS-------------KDRVATVRFNK-----SGNLLACQVAGKTVELFN
   WD 8  302-340    -KR--------RINRKKGK-------------KAGKGEQDVTE-----NGESNHTTGEEGSGSMIT
   WD 9  344-387    -VF--------KLLHTIRA-------------SKKICSISFCPLIPKNSISTVALSLNNNLLEFYS
   WD10  388-432    VGS--SAVTKLHCIELQGH-------------RSDIRSVTLSS-----DNSLLMSTS-HNAVKIWN
   WD11  436-472    -GS--------CLRTIDSG-------------Y--GLCGLIIP-----QNKYALVGNKSGAIEILD
   WD12  476-514    -GS--------CVEVLEAH-------------GGSIRSIVALP-----YENGFVTASADHDIKFWE
   WD13  520-567    KSEQDPKTLSVTFVRSMKM-------------NDDVLVAAISP-----DGKYLAAALLDSTVKVFF
   WD14  571-609    -FK--------VFRTLYGH-------------KLPVLCMDISS-----DGDLLVTGSADKNLKIWG
   WD15  613-651    -GD--------CHKSIFAH-------------SDSVMAVQFVR-----KTHYVFSVGKDRLVKYWD
   WD16  655-693    -FE--------LLLTLEGH-------------HADVWCLAISN-----RGDFLVTGSHDRSIRRWD
   WD17  751-803    TDL--------IIDALDMAEAEAKRIAEHEEEKRNGKASHFEP-----NALMLGLSPSDYVLRALS

   WD40 Template    TGE--------CLRTLSGH-------------TSGVTSVSFSP-----DGKRLVSGSEDGTIKVWD