WDRR: WD40 Repeat Recognition
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| JobID: 8502Q1659514376 Submitted: 2022-08-03 16:12:56 You can bookmark this page for further accessing the result in the future. Results on this server will be retained for 30 days. Job status: [Done] Total run time: 79729964 seconds. [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = CsaV3_3G011040 (Len=748) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (CsaV3_3G011040, Len=748): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MAQSNWEADKMLDVYIYDYLVKKKLHATAKSFMNEGKVAPDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSEAAAAYIE 80
WD40-rpts
Query 81 AQQIKQKEQQLQMQQLQLMRQAQLQRRDGTHPSLGGTLNAVNSEGMLGQPTASALAARMYEERMKNPSLVDPETSQPLLD 160
WD40-rpts
Query 161 ARMGLKPAANHPGQIGNPGSVNAALQQIQVRGQQPTDIKPEVSIGGTQRSLPMDPSSVYGPGLIQSKPGIGNAGLNAGVN 240
WD40-rpts
Query 241 NLPLKGWPLAQQQQILAQVQAQGSLGSSGMYSDMDPQRFRGLPRNNLNAKDGQPIANDGSIGSPMQSTSSKMNIPQMQQS 320
WD40-rpts (__
Query 321 SSQQQDGLHPQQVQQNRKRKGPSSSGAANSTGTGNTIGPNSQPSTPSTHTPGDGAVIAPNMQNVTSMPKNMLLYGNDGTG 400
WD40-rpts ______________________WD 1_______________________)__________________WD 2________
Query 401 GLASSTNQLEDIEHLGDIASLDDNVESFLSHDDGDGRDLFGTLKRIPSEHAAENSKGPSFSEVGSMRKSNSKVVCCHFSS 480
WD40-rpts __________)(____________________WD 3___________________) (_________________WD
Query 481 DGKLLASAGHDKRVVIWNMETLQTETTPEEHTLIISDVRFKPNSTQLATSSFDATIRLWDAAQPNYCLRAYTGHTSQVQS 560
WD40-rpts 4________________) (_________________WD 5________________) (_______________
Query 561 LDFHPKKSEIFCSCDANNEIRYWHVSQGSTHISKGGNGSKQVRFQPRTGQYLAATSDSVVSIIDFESDRPTLSLKGHASD 640
WD40-rpts __WD 6_________________)(_________________WD 7_________________) (____________
Query 641 VHSLCWDTNGDYLASVSRDSVRVWSIASGECIHELVSSGNLFQSCVFHPSYSSLLVIGSYQSLELWNMVENKCMTMPAHE 720
WD40-rpts ____WD 8________________) (_________________WD 9________________)(____________
Query 721 CVISSLAQSPVTGMVASASHDRSVKIWK 748
WD40-rpts ______WD10_________________)
 10 WD40-repeats found in QUERY=CsaV3_3G011040 (Len=748): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 2 318-370 4.92 317.84 0.00324 12.5% 19.01 WD 2: Seg 4 370-411 3.34 252.43 0.02441 20.0% 2.74 WD 3: Seg 7 412-456 4.57 303.34 0.00507 17.5% 15.86 WD 4: Seg 9 460-498 7.24 413.61 0.00017 27.5% 56.46 WD 5: Seg 13 502-540 9.68 514.37 7.3e-06 32.5% 55.05 WD 6: Seg 16 545-584 7.77 435.80 8.3e-05 35.0% 49.79 WD 7: Seg 20 585-624 7.80 436.71 8.1e-05 17.5% 53.12 WD 8: Seg 24 628-665 8.20 453.44 4.8e-05 32.5% 53.51 WD 9: Seg 28 669-707 8.66 472.46 2.7e-05 22.5% 57.14 WD10: Seg 32 708-748 8.44 463.16 3.6e-05 27.5% 52.88Multiple sequence alignment of 10 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 318-370 QQS-SSQQQDGLHPQQVQQNRKRKGPSSSGAA--NSTGTG------NT-IGPNSQPSTPSTHT WD 2 370-411 TPG-DGAVIAP-------------NMQNVTSMPKNMLLYG------ND-GTGGLASSTNQLED WD 3 412-456 -IE-HLGDIAS-------------LDDNVESF--LSHDDGDGRDLFGT-LKRIPSEHAAENSK WD 4 460-498 -FS-EVGSMRK-------------SNSKVVCC--HFSSDG------KL-LASAGHDKRVVIWN WD 5 502-540 -LQ-TETTPEE-------------HTLIISDV--RFKPNS------TQ-LATSSFDATIRLWD WD 6 545-584 -NY-CLRAYTG-------------HTSQVQSL--DFHPKK------SEIFCSCDANNEIRYWH WD 7 585-624 VSQ-GSTHISK-------------GGNGSKQV--RFQPRT------GQ-YLAATSDSVVSIID WD 8 628-665 -DR-PTLSLKG-------------HASDVHSL--CWDTNG------DY-LASVSRD-SVRVWS WD 9 669-707 -GE-CIHELVS-------------SGNLFQSC--VFHPSY------SS-LLVIGSYQSLELWN WD10 708-748 MVENKCMTMPA-------------HECVISSL--AQSPVT------GM-VASASHDRSVKIWK WD40 Template TGE-CLRTLSG-------------HTSGVTSV--SFSPDG------KR-LVSGSEDGTIKVWD |
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