WDRR: WD40 Repeat Recognition
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| JobID: 7WUD01659503861 Submitted: 2022-08-03 13:17:41 You can bookmark this page for further accessing the result in the future. Results on this server will be retained for 30 days. Job status: [Done] Total run time: 79747741 seconds. [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = CmaCh16G000160 (Len=703) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (CmaCh16G000160, Len=703): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MANAAPRSEFMATYDSPHPLYAMAISSAHTHSRNFPNRIALGSFIEQCTNRVDIVSFDPDSLSIQTHPSLSFDHPYPPTK 80
WD40-rpts (______________________
Query 81 LMFNPNALSSLRNSSDILASSGDYLRLWQVGDSSIEPLSVLNNSKTSEFCAPLTSFDWNEVEPKRIGTSSIDTTCTIWDI 160
WD40-rpts _WD 1_______________________) (________________WD 2________________)
Query 161 EKSVVETQFIAHDKEVYDIAWGEARVFASVSADGSVRIFDLRDKEHSTIIYESPQPDSPLLRLAWNKQDLRYMATILMDS 240
WD40-rpts (________________WD 3________________) (__________________WD 4___________
Query 241 NKVVILDIRSPSVPVAELERHHSSVNAIAWAPRSCRHICSAGDDKQALIWELPMVAGPNGIDPMSMYSAAHEINQLQWSA 320
WD40-rpts ______) (_________________WD 5_________________) (_________________WD
Query 321 AQPDWIALAFSNKMQLLKAIGAGFVVLSSNAMYPSTLLETKEEQLPSHTADPCFQHIRHFQIPVSIPMAALTSSMQTNLL 400
WD40-rpts 6________________) (_________________WD 7________________)(_________________W
Query 401 SAHSLTPSSSSSSSTVSTFPTSFSLPTSTNSAVLKIHALSSHASAFFNSCNHCFRTIVIAPRKRHATRSFSIRMSWDGPL 480
WD40-rpts D 8________________)_______________________WD 9_______________________)
Query 481 SSVKLIVQGKNLELTEAVKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAET 560
WD40-rpts
Query 561 VYASIDLVSSIMQRKLRKIKEKDSDHGRHMKGFDRSKIREPAPIVVEDEEEEVSQEDGGEAIDEIVRTKYFDMPPLTVEE 640
WD40-rpts
Query 641 AIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKENGNAEKIETVTVEVAREASLAE 703
WD40-rpts
 9 WD40-repeats found in QUERY=CmaCh16G000160 (Len=703): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 5 58-109 3.82 272.56 0.01314 17.5% 21.08 WD 2: Seg 9 122-159 6.73 392.60 0.00032 25.0% 43.81 WD 3: Seg 12 163-200 6.72 392.12 0.00032 17.5% 53.88 WD 4: Seg 16 207-247 4.51 300.87 0.00548 10.0% 53.45 WD 5: Seg 19 252-291 6.96 402.01 0.00024 20.0% 45.96 WD 6: Seg 23 300-338 5.39 337.37 0.00177 5.0% 39.56 WD 7: Seg 26 343-381 6.16 369.06 0.00066 5.0% 14.82 WD 8: Seg 28 382-420 5.34 335.26 0.00189 15.0% 23.22 WD 9: Seg 30 420-471 3.07 241.39 0.03422 10.0% 27.07Multiple sequence alignment of 9 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 58-109 DPD------------SLSIQTHPSLSFDHPYPPTKLMFNP-NALSSLRNSSDILASSGDY-LRLWQ WD 2 122-159 NNS---------------------KTSEFCAPLTSFDWNEVEPKRIGTS------SIDTT-CTIWD WD 3 163-200 -SV------------VE------TQFIAHDKEVYDIAWGE--ARVFASV------SADGS-VRIFD WD 4 207-247 -ST------------II------YESPQPDSPLLRLAWNKQDLRYMATI------LMDSNKVVILD WD 5 252-291 -SV------------PV------AELERHHSSVNAIAWAPRSCRHICSA------GDDKQ-ALIWE WD 6 300-338 -GI------------DP------MSMYSAAHEINQLQWSA-AQPDWIAL------AFSNK-MQLLK WD 7 343-381 -GF------------VV------LSSNAMYPSTLLETKEE-QLPSHTAD------PCFQH-IRHFQ WD 8 382-420 IPV------------SI-------PMAALTSSMQTNLLSA-HSLTPSSS------SSSST-VSTFP WD 9 420-471 PTSFSLPTSTNSAVLKI------HALSSHASAFFNSCNHC-FRTIVIAP------RKRHA-TRSFS WD40 Template TGE------------CL------RTLSGHTSGVTSVSFSP-DGKRLVSG------SEDGT-IKVWD |
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