Input parameters:

  Query = CsaV3_4G017380 (Len=553)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CsaV3_4G017380, Len=553):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MAFECQKSAGIYTDSRVIGKNYCEKQTAGSSSFNLEAESEGIESDKSEIITSLTSKHLLSKNAPVGGRSITDLPPAIISE 80  
WD40-rpts                                                                                      

Query       81 ILNCLDPKELGIVSCVSTVLHSIASEHHVWKEFYSERWGLPVPAQSAPVVPNGLSDERSWKDLFVEREFRSKTFMGRYTM 160 
WD40-rpts                  (____________________________WD 1___________________________)   (___

Query      161 EVLHGHTEAVRTVFVLASAKLIFTSGYDSIVRIWELEEGLSIASSRSLGCTIRALAADTKLLVAGGTDGFIHCWKAVEGL 240 
WD40-rpts      ______________WD 2________________)(_________________WD 3_________________)     

Query      241 SYLFDVKGPLNHNIEFRLWEHEGPITSLALDLTRIYSGSWDMTVRVWDRFSHRCLNILRHGDWVWGLVPHDTTVASTSGS 320 
WD40-rpts                 (________________WD 4_______________)  (_______________WD 5__________

Query      321 DVYVWDTNSGELATVIHEAHVGYAYALARSHTGDFLFTGGEDGAIHMFDITNRHVDTSAQLVGSWIPHSGPVYSLAFEFP 400 
WD40-rpts      _____)   (_________________WD 6_________________)         (________________WD 7_

Query      401 WLVSASSDGKLSLIDVRPLLRTKKRTLWKRDSRGQHVQSISVEPPQRMLHGFGSNLFGVDIGMDRIVCGGEEGVVRIWNF 480 
WD40-rpts      ______________)                           (________________WD 8_______________) 

Query      481 TQALEAERRARALRGIRLENRMRRRRLQIEMNTKSGGARSDQCSFAAKKTPMNGGDRVSVWHNKRGVSGKLKA 553 
WD40-rpts              (__________________WD 9_________________)                        

9 WD40-repeats found in QUERY=CsaV3_4G017380 (Len=553):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1    93-153      4.31  292.83  0.00702       15.0%     20.17
  WD 2:  Seg  4   157-195      9.33  500.11  1.1e-05       22.5%     55.87
  WD 3:  Seg  8   196-235      7.74  434.31  8.7e-05       35.0%     47.82
  WD 4:  Seg 13   252-288      7.16  410.28  0.00018       35.0%     51.76
  WD 5:  Seg 17   291-326      4.41  296.74  0.00622       20.0%     46.10
  WD 6:  Seg 21   330-369      8.49  465.37  3.3e-05       30.0%     54.95
  WD 7:  Seg 25   379-415      6.83  396.79  0.00028       27.5%     55.41
  WD 8:  Seg 31   443-479      7.27  414.84  0.00016       30.0%     44.02
  WD 9:  Seg 34   489-529      5.11  325.79  0.00253       10.0%     29.30

Multiple sequence alignment of 9 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   93-153    -VSCVS-TVLHSIASEHHVWKEFYSER-WGLPVPAQSAPVVPNGLSDERSWKDLFVEREFRSKT
   WD 2  157-195    -RYTME-V------------------L-HGHTEAVRTVFVLASAKLIFTS----GYDSIVRIWE
   WD 3  196-235    LEEGLS-I------------------A-SSRSLGCTIRALAADTKLLVAG----GTDGFIHCWK
   WD 4  252-288    -HNIEF-R------------------L-WEHEGPITSLAL--DLTRIYSG----SWDMTVRVWD
   WD 5  291-326    -SHRCL-N------------------I-LRHGDWVWGL--VPHDTTVAST----S-GSDVYVWD
   WD 6  330-369    -GELAT-V------------------IHEAHVGYAYALARSHTGDFLFTG----GEDGAIHMFD
   WD 7  379-415    -AQLVG-S------------------W-IPHSGPVYSLAF--EFPWLVSA----SSDGKLSLID
   WD 8  443-479    -EPPQR-M------------------L-HGFGSNLFGVDIGMD--RIVCG----GEEGVVRIWN
   WD 9  489-529    RARALRGI------------------R-LENRMRRRRLQIEMNTKSGGAR----SDQCSFAAKK

   WD40 Template    TGECLR-T------------------L-SGHTSGVTSVSFSPDGKRLVSG----SEDGTIKVWD