Input parameters:

  Query = CsaV3_3G023760 (Len=445)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CsaV3_3G023760, Len=445):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MEFHLQQTDLWTSMEEQTKSIDLPQNTAVLPDPIHFPNSPSRPSVPAPWAMSPAPPPSTNHQHFIYHCIASLHRPDGNIL 80  
WD40-rpts          (____________________WD 1____________________)                       (______

Query       81 SIAMTKEFIFVGSESGRIESWKLPECTGVGFIKARSGEVGAMFGSGRMVFSCHGDYRVRIWEVKMGNKRLKAKKISTLPS 160 
WD40-rpts      ______WD 2___________)   (________________WD 3_______________)                  

Query      161 KRSFLVVRKSSRRLQYHTDCISCLAYNDADKLLYTGSWDSTVKAWKISENRCVDSFIAHEGHVNAILINQEDGCVFTCSS 240 
WD40-rpts             (_________________WD 4________________)   (_________________WD 5_________

Query      241 DGSVKIWRRVFGESSHILTMILKFQLSPVNALALSLSSFSSSSSLKPYNFLYSGSSDGLINFWEKESSSSRYNHGGFLQG 320 
WD40-rpts      _______)       (______________________WD 6_____________________)         (______

Query      321 HHFGVLCLVAVKDLILSGSEDTTIRVWRREEIGNNEFVHSCISVIEGHHGPVRCLAAATEMDNMGNMLVCSGSLDQTFKV 400 
WD40-rpts      _________WD 7______________)          (___________________WD 8__________________

Query      401 WRLKLFAPQSLKKEIAEICGNHNPVLSPSWVEKRKLQGDEYYYCI 445 
WD40-rpts      _)                                           

8 WD40-repeats found in QUERY=CsaV3_3G023760 (Len=445):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2     5-50       5.71  350.66  0.00117       15.0%     -0.45
  WD 2:  Seg  5    74-102      4.64  306.24  0.00464       17.5%     38.00
  WD 3:  Seg  8   106-142      6.81  395.84  0.00029       12.5%     51.45
  WD 4:  Seg 14   168-206      9.77  518.03  6.5e-06       30.0%     53.84
  WD 5:  Seg 18   210-248      9.48  506.40  9.3e-06       20.0%     52.58
  WD 6:  Seg 22   256-304      6.74  392.88  0.00032       30.0%     54.45
  WD 7:  Seg 27   314-348      7.02  404.70  0.00022       40.0%     44.37
  WD 8:  Seg 30   359-402      7.80  436.78  8.1e-05       30.0%     51.36

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    5-50     LQQTDLWTSMEEQTKSIDLPQNTAVLPD-----P----------IHFPNSPSRPSVPAPWA
   WD 2   74-102    ---------R-----PDGNI--LSIAMT-----K----------EFI-FVGSESGRIESWK
   WD 3  106-142    -CTGVGFIKA-----RSGEVGAM--FGS-----G----------RMV-FSCHGDYRVRIWE
   WD 4  168-206    -RKSSRRLQY-----HTDCISCLAYNDA-----D----------KLL-YTGSWDSTVKAWK
   WD 5  210-248    -NRCVDSFIA-----HEGHVNAILINQE-----D----------GCV-FTCSSDGSVKIWR
   WD 6  256-304    -HILTMILKF-----QLSPVNALALSLS-----SFSSSSSLKPYNFL-YSGSSDGLINFWE
   WD 7  314-348    HGG---FLQG-----HHFGVLCLVAVKD-----------------LI-LSGSEDTTIRVWR
   WD 8  359-402    -HSCISVIEG-----HHGPVRCLAAATEMDNMGN----------MLV-CSGSLDQTFKVWR

   WD40 Template    TGECLRTLSG-----HTSGVTSVSFSPD-----G----------KRL-VSGSEDGTIKVWD