WDRR: WD40 Repeat Recognition
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| JobID: 7SD551659505833 Submitted: 2022-08-03 13:50:33 You can bookmark this page for further accessing the result in the future. Results on this server will be retained for 30 days. Job status: [Done] Total run time: 79745403 seconds. [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = CmaCh20G011400 (Len=468) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (CmaCh20G011400, Len=468): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MFGSGGSSRRGLVFSEHDDNNNSVHKTRFNKLNKSCLHDSDISLRLPTRHSHNLDHTILPSMDTESDPDPSFSTSPFARS 80
WD40-rpts (_________________WD 1_________________)
Query 81 PWSAHFNTDLPPTAEDNSFLPNILMGSLVREEGHIYSLAAAGDLLYTGSDSKNIRVWKAQKEFSGFKSNSGLVKSIVIGG 160
WD40-rpts (________________________WD 2_______________________)(________________WD 3_
Query 161 QKIFTGHQDGKVRVWKVSTKDPSVHKRVGTLPTLGDYIKCSMKPRNYMEGRRRRNLWIKHFDAISSLSLSEDQNFLYSAS 240
WD40-rpts _______________) (______________WD 4_____
Query 241 WDKTFKVWRVSDSKCLESIQAHDDAVNTLVSSIDGLVFTGSADGSVKVWRRELQGKGTKHFFSQTLVKQECAITALAVND 320
WD40-rpts ________) (________________WD 5________________) (_________________WD
Query 321 EATFIYCGSSDGVVNFWEREKSLSHGGTLRGHKLAVLCLATAGRLLLSGSADMGICVWQRTAAEHACLSVLTAHTGPVKC 400
WD40-rpts 6________________)(__________________WD 7_________________) (_______________
Query 401 LAVEKDSEAGEGERRWIVYSGSLDKSVKIWRVSEQPPAVEQSPGQQLAESPSGSGFFVNAPSFVIRGQ 468
WD40-rpts ______WD 8____________________)
 8 WD40-repeats found in QUERY=CmaCh20G011400 (Len=468): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 1 7-46 7.78 435.91 8.3e-05 20.0% 50.62 WD 2: Seg 6 86-138 5.34 335.04 0.00190 22.5% 45.74 WD 3: Seg 10 139-176 8.32 458.19 4.2e-05 20.0% 52.40 WD 4: Seg 16 217-249 7.99 444.56 6.3e-05 32.5% 47.70 WD 5: Seg 19 253-290 8.60 469.99 2.9e-05 35.0% 52.77 WD 6: Seg 23 300-338 8.47 464.37 3.4e-05 20.0% 53.89 WD 7: Seg 27 339-379 7.04 405.58 0.00021 37.5% 47.86 WD 8: Seg 31 385-431 7.65 430.64 9.8e-05 32.5% 49.87Multiple sequence alignment of 8 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 7-46 SSR---------------RG---LVFSEHDDNNNSVHKTRFNKL--------NKSCLHDSDISLRL WD 2 86-138 FNTDLPPTAEDNSFLPNILM---GSLVREEGHIYSL--AAAGDL--------LYTGSDSKNIRVWK WD 3 139-176 AQK---------------EF---SGFKSNSGLVKSIVIG--GQK--------IFTGHQDGKVRVWK WD 4 217-249 -------------------------WIKHFDAISSLSLSEDQNF--------LYSASWDKTFKVWR WD 5 253-290 -SK---------------CL---ESIQAHDDAVNTLVSSIDG-L--------VFTGSADGSVKVWR WD 6 300-338 -HF---------------FS---QTLVKQECAITALAVNDEATF--------IYCGSSDGVVNFWE WD 7 339-379 REK---------------SLSHGGTLRGHKLAV--LCLATAGRL--------LLSGSADMGICVWQ WD 8 385-431 -HA---------------CL---SVLTAHTGPVKCLAVEKDSEAGEGERRWIVYSGSLDKSVKIWR WD40 Template TGE---------------CL---RTLSGHTSGVTSVSFSPDGKR--------LVSGSEDGTIKVWD |
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