Input parameters:

  Query = CsaV3_1G039320 (Len=989)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CsaV3_1G039320, Len=989):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MKSYAKVSTTANNNTSTSTNNKPANGFLPNSLKFISSCIKTASSGVRSASASVAASISGDAHDHKDQVLWAGFDKLELCP 80  
WD40-rpts                                                                                      

Query       81 SFSKHVLLVGYTNGFQVLDVEDAPNVSELVSRRDDPVTFMQMQPLPAKSDGQEGFGASHPILLVVACDESQSSGLMQSGR 160 
WD40-rpts                                                                                      

Query      161 NGLVRDGYPNGHSDRITLAPMAVRFYSLKSRSYVHVLRFRSTVYMIRCSPEIVAVGLASQIYCFDALTLESKFSVLTYPV 240 
WD40-rpts                                                                                      

Query      241 PQLGGQGTSGVNIGYGPMAVGPRWLAYASNNPLQSNTGRLSPQSLTPPGVSPSTSPGSGNLVARYAMESSKHLAAGLINL 320 
WD40-rpts                                                                                      

Query      321 GDMGYKTLSKYYQEFVPDGSNSPLSSNSSRKVGRLHSTETDAAGMVVVKDFVSKAVISQFKAHSSPISALCFDPSGTLLV 400 
WD40-rpts                 (_________________WD 1________________)   (_________________WD 2_____

Query      401 TASTHGSNINIFRIMPSHIQNGSGTQSYDWSSSHVHLYKLHRGLTSAVIQDICFSHYSQWIAIVSSRGTCHIFALSPFGG 480 
WD40-rpts      ____________)                             (_____________WD 3_____________)      

Query      481 ETVLQMHNSFVDGPNLIPASCVPWWSTSTFITNQQSFSPPPPPPVTLSVVSRIKNCNSGWLSTVSMAAASASGKVSIPSG 560 
WD40-rpts                                                                                      

Query      561 AISAVFHSCIPQNPQSPQLSSNTLEHLLVYTPSGHVIQHKLLPSMGGECGETVLRSPNASMQMKDEELRVRVEPIQWWDV 640 
WD40-rpts                                                                                      

Query      641 CRRAAWPEREECISSVTLRRKETVESAEDTSHIQENHLENQELVKPDRSLLYLSNSEVQINSGRIPIWQKSKVHFYTMSF 720 
WD40-rpts                                                                                      

Query      721 PGSNEQSSMKDHMNGEIEIEKVPIHEVEIKRKDLLPVFDHFRGIQSDWLDRSHDGARSSSPSLDFHGAGMKYSEGVTISD 800 
WD40-rpts                                                                                      

Query      801 LKLNSPGLEENSDGISYPPIAKSVGDIKMEEKDGSVLPSPVMKENSFQERASVSSKQSSTGFSPVEGSDFTNSPSTVTSC 880 
WD40-rpts                                                                                      

Query      881 SLSTDRTILKAVQSSKRGGASEGSNTSSNRSDLSMNILDEGPMGDSFDYEPFFQEEYCKATGLSNCRDPAEAVADDMDSS 960 
WD40-rpts                                                                                      

Query      961 GSPHYREKSEEDGDTDDMLGGVFAFSEEG 989 
WD40-rpts                                   

3 WD40-repeats found in QUERY=CsaV3_1G039320 (Len=989):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 18   332-370      3.05  240.64  0.03501       22.5%     15.59
  WD 2:  Seg 20   374-413      6.75  393.40  0.00031       25.0%     54.39
  WD 3:  Seg 25   443-474      4.16  286.37  0.00858       12.5%     45.11

Multiple sequence alignment of 3 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  332-370    YQEF--VPDGSNSPLSSNSSRKVGRLHSTETDAAGM-VVVKD
   WD 2  374-413    -KAVISQFKAHSSPISALCFDPSGTLLVTASTH-GSNINIFR
   WD 3  443-474    --------GLTSAVIQDICFSHYSQWIAIVSSR-GT-CHIFA

   WD40 Template    TGECLRTLSGHTSGVTSVSFSPDGKRLVSGSED-GT-IKVWD