Input parameters:

  Query = sp_Q2GV40_ATG18_CHAGB (Len=394)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (sp_Q2GV40_ATG18_CHAGB, Len=394):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MADLSNTKLNYVTFNQDHSCLAVATSRGFRIYHTDPFSKIFNSDEGNVTIIEMLFSTSLVAMVRSPRHLVIQNTKRGSII 80  
WD40-rpts      (______________WD 1_____________)(_________________WD 2_________________)   (___

Query       81 CDLTFPTAVLAVRLNRKTLAVVLEEEIYVYDIGNMALKHTIATSPNPNAIFALSPMSDRSYIAYPMPKPREDQGERRPAH 160 
WD40-rpts      ____________WD 3______________)                       (____________________WD 4_

Query      161 APPLSEYVPPTSGALMVFDTTAGKAVNVIEAHKMPLCCIALNHEGTKVATASERGTIVRVHSVPEGHKLFEFRRGTIPST 240 
WD40-rpts      __________________)   (_________________WD 5_________________)   (______________

Query      241 IYNMSFNLSSTLLCVSSSSETVHIFRLASAQNANAGGAGPAALETPGSPRANRWSRSKSIDGSEYSPSGDSDSSPRGETP 320 
WD40-rpts      ____WD 6_________________)   (_________________WD 7________________)            

Query      321 EAGPSGPSAARRQSGTFGSMLRRSSQIVSRSVAGAVVPYLPQSVAEMWEPQRDFASVKIPKPTNAGDALLGPCL 394 
WD40-rpts                                                                                

7 WD40-repeats found in QUERY=sp_Q2GV40_ATG18_CHAGB (Len=394):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-33       4.11  284.44  0.00911       10.0%     41.22
  WD 2:  Seg  4    34-73       6.11  366.98  0.00071        7.5%     45.67
  WD 3:  Seg  8    77-111      3.60  263.25  0.01751       20.0%     46.31
  WD 4:  Seg 14   135-179      5.10  325.45  0.00256        7.5%     16.70
  WD 5:  Seg 16   183-222      8.10  449.18  5.5e-05       20.0%     56.39
  WD 6:  Seg 20   226-266      6.79  394.98  0.00030       22.5%     57.99
  WD 7:  Seg 23   270-308      6.61  387.63  0.00037       10.0%     15.10

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-33     ------MA-----DLSN--TKLNYVTFNQDHSCLAVAT-SRG-FRIYH
   WD 2   34-73     TDPFSKIF-----NSDE--GNVTIIEMLFSTSLVAMVRSPRH-LVIQN
   WD 3   77-111    -GSIICDL-----T-FP--TAVLAVRLNRKTLAVVL---EEE-IYVYD
   WD 4  135-179    PMSDRSYIAYPMPKPRE--DQGERRPAHAPPLSEYVPPTSGA-LMVFD
   WD 5  183-222    -GKAVNVI-----EAHK--MPLCCIALNHEGTKVATASERGTIVRVHS
   WD 6  226-266    -GHKLFEF-----RRGTIPSTIYNMSFNLSSTLLCVSSSSET-VHIFR
   WD 7  270-308    -AQNANAG-----GAGP--AALETPGSPRANRWSRSKSIDGS-EYSPS

   WD40 Template    TGECLRTL-----SGHT--SGVTSVSFSPDGKRLVSGSEDGT-IKVWD