Input parameters:

  Query = CsaV3_5G001800 (Len=743)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CsaV3_5G001800, Len=743):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MMDLVYCEEEIERFYDTREEISSVSDWGSDCSENCSTSFGDDGDIPENLRYVGWIRNLESVYERRNKFFKWMGLDLDQNF 80  
WD40-rpts                                                                                      

Query       81 DNTDEEEGDSWKVYRDRIIEDCGTVLRLSGSEGELSSSLTISSMSNEAPESSGNVAVEENHACTIRNLDNGTEFIVDSFR 160 
WD40-rpts                                  (_________________WD 1________________)             

Query      161 QDGMLNMLREVGSNRSFSFDEFERNIGQSPLVQQLFRKNVEKAGVIVNARKQAKKGWLRKLGAVACIVDNGEGAMKTGVS 240 
WD40-rpts                                                           (___________________WD 2___

Query      241 NSSSKAGIQQVRVHPYKKQSKELSSLFVGQEFEAHKGSISTMKFSVDGRYLATAGEDGVVRVWQVLEDVRFDNFDIHNVD 320 
WD40-rpts      ________________)             (______________WD 3______________)   (____________

Query      321 PSSLYFSMNHLSKLDPLDVPKETLGKTKLKRSSSTACVIFPPKLFRILEKPLHEFLGHSGEVLDLSWSKKGLLLSSSVDK 400 
WD40-rpts      ____________WD 4________________________)       (________________WD 5___________

Query      401 TVRLWQLGCDTCLRVYCHNNYVTCVSFNPIDENHFISGSIDGKVRIWEVLACQVIDYIDIREIVSAVCYRPDGKGGIVGS 480 
WD40-rpts      _____)(__________________WD 6__________________)(__________________WD 7_________

Query      481 MTGNCRFYNIIDNRLELDAQICLNGKKKSPGKRIIGFEFSPSDPSKLMVCSADSPVHIISRSDVICKFKGLRNGGNKMSA 560 
WD40-rpts      ________)              (________________WD 8_______________)   (________________

Query      561 SFTSDGKHIVSASEENVYVWNYNCKDKASRKKKIWSSESFFSRSTTIAIPWSGVKITPEPPLSPTRVCDTPGSIPEMEPK 640 
WD40-rpts      WD 9________________)         (_________________WD10________________)           

Query      641 YSDDDGDREHKVPSSSPDCFSLSRTLFPELLKGTATWPEEKLHDSSSMTPSPSPSMCKTEFKFLKNACQSMLSSPHMWGL 720 
WD40-rpts                                                                    (______________WD1

Query      721 VIVTAGWDGRIRTFLNYGLPIRL 743 
WD40-rpts      1_____________)        

11 WD40-repeats found in QUERY=CsaV3_5G001800 (Len=743):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  3   109-147      4.71  309.03  0.00425       15.0%      1.38
  WD 2:  Seg  7   214-257      4.27  291.18  0.00739       12.5%     10.85
  WD 3:  Seg 10   271-304      8.83  479.48  2.1e-05       27.5%     49.16
  WD 4:  Seg 13   308-361      5.58  345.24  0.00138       17.5%     46.68
  WD 5:  Seg 17   369-406      7.68  431.75  9.4e-05       32.5%     52.03
  WD 6:  Seg 21   407-448      8.09  449.05  5.5e-05       37.5%     55.21
  WD 7:  Seg 25   449-489      7.16  410.61  0.00018       25.0%     55.47
  WD 8:  Seg 30   504-540      6.26  373.42  0.00058       20.0%     50.87
  WD 9:  Seg 33   544-581      7.26  414.54  0.00016       32.5%     55.83
  WD10:  Seg 37   591-629      6.54  384.85  0.00040       12.5%     31.72
  WD11:  Seg 42   703-735      4.73  310.11  0.00411       20.0%     44.56

Multiple sequence alignment of 11 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  109-147    SG-S--EGELSS----SLTISSMSNEAP-E---------------SSGNVAVEENHACTIRN
   WD 2  214-257    KK-GW-LRKLGAVACIVDNGEGAMKTGV-S---------------NSSSKAGIQQVRVHPYK
   WD 3  271-304    --------EFEA----HKGSISTMKFSV-D---------------GRYLATAGEDGVVRVWQ
   WD 4  308-361    -D-VR-FDNFDI----HNVDPSSLYFSM-NHLSKLDPLDVPKETLGKTKLKRSSSTACVIFP
   WD 5  369-406    -E-KP-LHEFLG----HSGEVLDLSWSK-K---------------G-LLLSSSVDKTVRLWQ
   WD 6  407-448    LGCDT-CLRVYC----HNNYVTCVSFNPID---------------ENHFISGSIDGKVRIWE
   WD 7  449-489    VL-ACQVIDYID----IREIVSAVCYRP-D---------------GKGGIVGSMTGNCRFYN
   WD 8  504-540    NG-K-----KKS----PGKRIIGFEFSPSD---------------PSKLMVCSADSPVHIIS
   WD 9  544-581    -V-IC-KFKGLR----NGGNKMSASFTS-D---------------GKHIVSASEE-NVYVWN
   WD10  591-629    -K-KK-IWSSES----FFSRSTTIAIPW-S---------------GVKITPEPPLSPTRVCD
   WD11  703-735    -----------F----LKNACQSMLSSP-H-------------MWGLVIVTAGWDGRIRTFL

   WD40 Template    TG-EC-LRTLSG----HTSGVTSVSFSP-D---------------GKRLVSGSEDGTIKVWD