Input parameters:

  Query = CmaCh01G016590 (Len=470)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CmaCh01G016590, Len=470):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MDEEQIADFFRSFVRTRLILRLPLISTSPSTCIPAPKNIPARYLEGYKKLRSWACNSLDLYTHELLRVLYPVFIHCFIDL 80  
WD40-rpts                                                                                      

Query       81 VAKGHAQEDLQKLEGALSLSHLEEMEFAHSLRQIKVNIKICQYSHEMLLHYLHKTQPTVILGLSMNASTSMLLEDSLEER 160 
WD40-rpts                                                                     (________________

Query      161 LEKAAGLLSDSEKADGDADENKKRTTEGGKQGASIKKVKDKTSGATGKTLRVEANSVSTAPRVKPELALLVISTEVEQSI 240 
WD40-rpts      __________WD 1_________________________)                               (________

Query      241 LEDLRSRVQLIYSVSMLMHLISLILVLMHDEALKVWDMAKLGQQAGNTVLQGENRLSTTDQMRGHTSGKWSYTLFQGHSG 320 
WD40-rpts      ____________WD 2____________________)                                     (_____

Query      321 PVHSATFSPIGDFVLYSSADTTVRLWSTKLNGSMGCSDSGAIFLPTWCVQWHANCNYITTGSSDRTVRLWDVESGECVRI 400 
WD40-rpts      _________WD 3_____________)   (__________________WD 4_________________)   (_____

Query      401 FIGHRSMILSLAMSPDGRFMASGDEDGMIMMWDLSTGHCVTPLIGHTSCVWTLTFSCEGSLVAPGLLIAQ 470 
WD40-rpts      ____________WD 5________________)   (______________WD 6______________)

6 WD40-repeats found in QUERY=CmaCh01G016590 (Len=470):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  3   144-200      2.91  235.07  0.04148       15.0%     -3.66
  WD 2:  Seg  7   232-277      7.06  406.16  0.00021       25.0%     54.11
  WD 3:  Seg 13   315-347      8.40  461.62  3.7e-05       30.0%     42.91
  WD 4:  Seg 16   351-391      7.76  435.13  8.5e-05       17.5%     54.56
  WD 5:  Seg 20   395-433     11.10  573.11  1.2e-06       50.0%     54.05
  WD 6:  Seg 23   437-470      5.58  345.02  0.00139       30.0%     43.13

Multiple sequence alignment of 6 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  144-200    SMN-----ASTSMLLED--SLEERLEKAAGLLSDSEKADGDADENKK-RTTEGGKQGASIKKVKD
   WD 2  232-277    ISTEVEQSILEDLRSRV--Q----------------LIYSVSMLMHLISLILVLMHDEAL-KVWD
   WD 3  315-347    ------------FQGHS--G----------------PVHSATFSPIG-DFVLYSSADTTV-RLWS
   WD 4  351-391    -NG-----SMGCSDSGAIFL----------------PTWCVQWHANC-NYITTGSSDRTV-RLWD
   WD 5  395-433    -GE-----CVRIFIGHR--S----------------MILSLAMSPDG-RFMASGDEDGMI-MMWD
   WD 6  437-470    -GH-----CVTPLIGHT--S----------------CVWTLTFSCEG-SLVAPGLLIA------Q

   WD40 Template    TGE-----CLRTLSGHT--S----------------GVTSVSFSPDG-KRLVSGSEDGTI-KVWD