WDRR: WD40 Repeat Recognition
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JobID: 7FYSQ1331385585    Submitted: 2012-03-10 21:19:45

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Job status:  [Done] Total run time: 407865540 seconds.    [Download result as txt]    [Query sequence in FASTA]
Input parameters:
  Query = 4DNW_A_PDBID_CHAIN_SEQUENCE (Len=374)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (4DNW_A_PDBID_CHAIN_SEQUENCE, Len=374):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 APPRKVLIISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGADHTVAYSQSGMEVYS 80  
WD40-rpts                                                                                      

Query       81 WGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEG 160 
WD40-rpts                                                                                      

Query      161 IRIKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVACGWRHTISVSYSGALYTYGWS 240 
WD40-rpts                                                                                      

Query      241 KYGQLGHGDLEDHLIPHKLEALSNSFISQISGGWRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVRFPDDQKVV 320 
WD40-rpts                                                                                      

Query      321 QVSCGWRHTLAVTERNNVFAWGRGTNGQLGIGESVDRNFPKIIEALSVDGASGQ 374 
WD40-rpts                                                            



No WD40-repeats found in QUERY=4DNW_A_PDBID_CHAIN_SEQUENCE (Len=374)!

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