WDRR: WD40 Repeat Recognition
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| JobID: 76MCX1659514113 Submitted: 2022-08-03 16:08:33 You can bookmark this page for further accessing the result in the future. Results on this server will be retained for 30 days. Job status: [Done] Total run time: 79734596 seconds. [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = CsaV3_2G003060 (Len=1135) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (CsaV3_2G003060, Len=1135): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMRYFEDMVTNGEWEEVEKYLSGFTKVDDNRYSMKIFFEIRKQK 80
WD40-rpts
Query 81 YLEALDKRDRAKAVDILVKDLKVFSAFNEELFKEITQLLTLENFRDNEQLSKYGDTKSARGIMLAELKKLIEANPLFRDK 160
WD40-rpts
Query 161 LQFPTLKNSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFVDHSCGQPNGARAPSPVTNPLMGGVPKAAAFPPLSAHGPFQ 240
WD40-rpts
Query 241 PTPAALPTSLAGWMANPSPVPHPSASAAPIGLNAANNAAILKRPRTPPTNNPTMDYQTADSEHVLKRSRPFGLSEEVTNL 320
WD40-rpts
Query 321 PVNILPVGYGNQGHGQSSYSSDDLPKNVVTTLSQGSVVKSMDFHPQQQTILLVGTNVGDVMIWEVGGRERIAIRNFKVWD 400
WD40-rpts (___________________WD 1___________________)
Query 401 LAARSVALQASLASDYTASINRVMWSPDGTLFGVAYSKHIVHIYSYQAGDELRNHLEIEAHVGSVNDLAFSYPNKQLCLV 480
WD40-rpts (________________WD 2_______________)(_____________________WD 3_________
Query 481 TCGEDRVIKVWDAVTGVKQFTFEGHDAPVYSICPHHKENIQFIFSTAADGKIKAWLYDNMGSRVDYDAPGHSSTTMAYSA 560
WD40-rpts ___________) (__________________WD 4_________________) (___________________W
Query 561 DGTRLFSCGTNKDGESYLVEWNESEGAVKRTYQGLGKRSVGVVQFDTTKNRFLAAGDDFSVKFWDMDSVNILTSIDADGG 640
WD40-rpts D 5__________________) (_________________WD 6_________________) (___________
Query 641 LPASPCIRFNKDGVLLAVSTNDNGIKILANAEGFRMLRTVENRTFDASRVASAAVVKAPPIGSFGPPAVSVGMSIGDRTP 720
WD40-rpts _______WD 7_________________)(___________________WD 8__________________) (
Query 721 PVAAAMVGINNDSRSLADVKPRIADESVDKSRIWKLTEINEPTQCRSLRLPDNLTASRVSRLIYTNSGLAILALASNAVH 800
WD40-rpts _________________WD 9________________)(____________________WD10_________________
Query 801 KLWRWQRNDRNVTVKATASVAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTF 880
WD40-rpts ___) (___________________WD11___________________) (______
Query 881 MPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNQLNVLVSSGADSQLCVWSTDGWE 960
WD40-rpts ___________WD12_________________) (_________________WD13________________)
Query 961 KQVNKFLQVPSSRTTAPLADTRVQFHIDQIHLLAIHETQIAIYEAPKLECLKQWVPREASGPITHATFSCDSQSIYVSFE 1040
WD40-rpts (_______________WD14_______________)(___________________WD15____________
Query 1041 DGSVGVLTASTLRLRCRINPNAYLSSNPSSLRVHPLVIAAHPSEPNQFALGLSDGGVHVLEPSESEGKWGTSPPVENGAG 1120
WD40-rpts _______) (______________________WD16______________________)
Query 1121 PSTATGAAGPDQPQR 1135
WD40-rpts
 16 WD40-repeats found in QUERY=CsaV3_2G003060 (Len=1135): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 7 341-384 6.57 386.08 0.00039 25.0% 52.66 WD 2: Seg 12 409-445 7.09 407.70 0.00020 17.5% 47.62 WD 3: Seg 15 446-492 7.01 404.06 0.00022 35.0% 53.65 WD 4: Seg 19 496-536 7.29 415.66 0.00016 30.0% 56.96 WD 5: Seg 23 540-582 6.12 367.67 0.00069 20.0% 55.05 WD 6: Seg 27 586-625 7.33 417.29 0.00015 30.0% 57.82 WD 7: Seg 31 629-669 6.24 372.53 0.00059 22.5% 57.97 WD 8: Seg 35 670-712 6.47 382.01 0.00044 22.5% 28.10 WD 9: Seg 38 720-758 4.97 320.03 0.00303 10.0% 30.60 WD10: Seg 42 759-804 6.29 374.63 0.00056 15.0% 48.20 WD11: Seg 48 827-870 4.41 297.02 0.00617 15.0% 43.69 WD12: Seg 52 874-913 7.07 406.88 0.00020 22.5% 58.50 WD13: Seg 56 917-955 8.93 483.39 1.9e-05 32.5% 58.25 WD14: Seg 61 969-1004 3.61 263.67 0.01728 15.0% 36.92 WD15: Seg 64 1005-1048 6.63 388.33 0.00036 20.0% 56.33 WD16: Seg 68 1052-1101 3.70 267.55 0.01534 12.5% 38.34Multiple sequence alignment of 16 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 341-384 SD-----D------L----P-----KNVVTTL--S-QGSVVKSM--D-----------FHP-QQQT-ILLVGTNV----GDVMIWE WD 2 409-445 --------------Q----A-----S---LAS--D-YTASINRV--M-----------WSP-DGTL--FGVAYSK----HIVHIYS WD 3 446-492 YQAGDELR------N----H-----L---EIE--A-HVGSVNDL--A-----------FSY-PNKQLCLVTCGED----RVIKVWD WD 4 496-536 -G-----V------K----Q-----F---TFE--G-HDAPVYSICPH-----------HKE-NIQF--IFSTAAD----GKIKAWL WD 5 540-582 -M-----G------S----R-----V---DYD--A-PGHSSTTM--A-----------YSA-DGTR--LFSCGTNKDGESYLVEWN WD 6 586-625 -G-----A------V----K-----R---TYQ--GLGKRSVGVV--Q-----------FDT-TKNR--FLAAGDD----FSVKFWD WD 7 629-669 -V-----N------I----L-----T---SIDADG-GLPASPCI--R-----------FNK-DGVL--LAVSTND----NGIKILA WD 8 670-712 NA-----E---GFRM----L-----R---TVE--N-RTFDASRV--A-----------SAA-VVKA--PPIGSFG----PPAVSVG WD 9 720-758 -P-----P------V----A-----A---AMV--G-INNDSRSL--A-----------DVK-PRIA--DESVDKS----RIWKLTE WD10 759-804 IN-----EPTQCRSL----R-----L---PDN--L-TASRVSRL--I-----------YTN-SGLA--ILALASN----AVHKLWR WD11 827-870 PP-----S------G----ILMTNDI---SDT--N-PEDAVPCF--A-----------LSK-NDSY--VMSAS-G----GKISLFN WD12 874-913 -F-----K------T----M-----T---TFM--P-PPPAATFL--A-----------FHPQDNNI--IAIGMED----SSIQIYN WD13 917-955 -D-----E------V----K-----T---KLK--G-HQKRITGL--A-----------FSN-QLNV--LVSSGAD----SQLCVWS WD14 969-1004 VP-----S---------------------SRT--T-APLADTRV--Q-----------FHI-DQIH--LLAIH-E----TQIAIYE WD15 1005-1048 AP-----K------LECLKQ-----W---VPR--E-ASGPITHA--T-----------FSC-DSQS--IYVSFED----GSVGVLT WD16 1052-1101 -L-----R------L----R-----C---RIN--P-NAYLSSNP--SSLRVHPLVIAAHPS-EPNQ--FALGLSD----GGVHVLE WD40 Template TG-----E------C----L-----R---TLS--G-HTSGVTSV--S-----------FSP-DGKR--LVSGSED----GTIKVWD |
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