Input parameters:

  Query = CmaCh11G015690 (Len=409)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CmaCh11G015690, Len=409):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MPEGATTLTASPPELGYHFVQLLHLPQTSNHHVAAKAIQSQQVAAFSRRRERRMGANSEANQDGSDEQQKRSEIYTYEAP 80  
WD40-rpts                                                                                      

Query       81 WHIYAMNWSVRRDKKYRLAIASLLEQYPNRVEIVQLDDSSGEIRSDPNLSFEHPYPPTKTIFIPDKECQRPDLLATSSDF 160 
WD40-rpts                                          (______________________WD 1_________________

Query      161 LRVWRISDDPSSVELKSLLNGNKNSEFCGPLTSFDWNDAEPKRIGTSSIDTTCTIWDIERETVDTQLIAHDKEVYDIAWG 240 
WD40-rpts      ____)             (_________________WD 2________________)   (________________WD 

Query      241 GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQ 320 
WD40-rpts      3________________)      (__________________WD 4_________________)    (__________

Query      321 ASANAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILRQH 400 
WD40-rpts      _______WD 5_________________)          (_________________WD 6________________)  

Query      401 LALVLHLHR 409 
WD40-rpts               

6 WD40-repeats found in QUERY=CmaCh11G015690 (Len=409):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  7   117-165      4.29  291.87  0.00724       17.5%     21.48
  WD 2:  Seg 11   179-217      6.03  363.57  0.00078       25.0%     41.44
  WD 3:  Seg 14   221-258      6.98  403.17  0.00023       25.0%     52.03
  WD 4:  Seg 18   265-305      4.52  301.31  0.00540       12.5%     53.76
  WD 5:  Seg 22   310-349      7.11  408.57  0.00019       15.0%     48.19
  WD 6:  Seg 26   360-398      5.27  332.53  0.00205        7.5%     45.77

Multiple sequence alignment of 6 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  117-165    DDSSGEIRSDPNLSFEHPYPPTKTIFIP-DKE-CQRPDLLATSSDF-LRVWR
   WD 2  179-217    LNG--------NKNSEFCGPLTSFDWNDAEPK-RIGT---SSIDTT-CTIWD
   WD 3  221-258    -ET------VDTQLIAHDKEVYDIAWGG-VG--VFAS---VSADGS-VRVFD
   WD 4  265-305    -ST------IIYESSEPDTPLVRLGWNKQDPR-YMAT---IIMDSAKVVVLD
   WD 5  310-349    -TL------PVVELQRHQASANAIAWAP-HSSCHICT---AGDDSQ-ALIWD
   WD 6  360-398    -GL------DPILAYTAGAEIEQLQWSS-SQP-DWVA---IAFSTK-LQILR

   WD40 Template    TGE------CLRTLSGHTSGVTSVSFSP-DGK-RLVS---GSEDGT-IKVWD