Input parameters:

  Query = CsaV3_1G009920 (Len=524)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CsaV3_1G009920, Len=524):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MAEPAEDIDGITSKEEQEEALVALIDHRCHEVQNLKHRVSYYTSQLEEAQKRLQDTESKLARLRRQSNAVSSKDSLRSRA 80  
WD40-rpts                                                                                      

Query       81 VSVKVEQTVNEGSRPQPVSKPELVIPAVVPKTSQNSALAGNGAKASNSSRAQSSPSHIKNVVKVEGDKNIGNTSLRETSN 160 
WD40-rpts                                                                                      

Query      161 TPDRGTKRKLEQQFKEHKELIPLIRSSSSPSQIRCVGSNHISSQHKRKLRSLISCPVNEQLFVTSALDGVVNLWQLQARG 240 
WD40-rpts                                          (_________________WD 1________________)     

Query      241 SSASLLSSADCVSPKQRRWPEDMAWHPEGNRVFLVYSADGGDSQVSIMNLNKSEGKARVTFLEDKPHVKGIINSIIFLPW 320 
WD40-rpts           (___________________WD 2___________________)         (_________________WD 3

Query      321 DSTSFITGGSDHAVIQWKEGDGDKRWKPKALHRSLHSSAVMGVAGMQQKPIVLSAGADKRILGFDVNVGRTEFRHQIESK 400 
WD40-rpts      _________________)        (_________________WD 4________________)   (___________

Query      401 CMSILPNPCDFNLFMVQTGTPGKQLRLYDIRLRQTELHAFGWEQKSSESQSALINQAWSPDGLILTSGSADPVIHLFDIR 480 
WD40-rpts      _______WD 5_________________)           (________________WD 6________________)  

Query      481 YNLHKPSQSISAHHKRVFKAVWLESLPLLISISSDLNIGLHKTA 524 
WD40-rpts         (_________________WD 7________________)  

7 WD40-repeats found in QUERY=CsaV3_1G009920 (Len=524):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  3   197-235      7.25  414.24  0.00016       20.0%     42.79
  WD 2:  Seg  7   246-289      7.32  417.20  0.00015       10.0%     32.60
  WD 3:  Seg 10   299-338      6.82  396.55  0.00028       20.0%     45.89
  WD 4:  Seg 15   347-385      8.65  472.07  2.7e-05       25.0%     47.15
  WD 5:  Seg 18   389-429      4.71  309.40  0.00421        7.5%     38.90
  WD 6:  Seg 23   441-478      8.57  468.69  3.0e-05       35.0%     48.78
  WD 7:  Seg 26   484-522      8.08  448.37  5.6e-05       20.0%     53.01

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  197-235    --GSNHISSQHKRKLRSL--ISCPVNEQLF----VTSALDGVVNLWQ
   WD 2  246-289    LSSADCVSPKQRRWPEDM--AWHP-EGNRVFLVYSADGGDSQVSIMN
   WD 3  299-338    -VTFLEDKPHVKGIINSI--IFLPWDSTSF----ITGGSDHAVIQWK
   WD 4  347-385    KPKAL-HRSLHSSAVMGV--AGMQ-QKPIV----LSAGADKRILGFD
   WD 5  389-429    -GRTEFRHQIESKCMSILPNPCDF-NLFMV----QTGTPGKQLRLYD
   WD 6  441-478    GWE--QKSSESQSALINQ--AWSP-DGLIL----TSGSADPVIHLFD
   WD 7  484-522    -HKPSQSISAHHKRVFKA--VWLE-SLPLL----ISISSDLNIGLHK

   WD40 Template    TGECLRTLSGHTSGVTSV--SFSP-DGKRL----VSGSEDGTIKVWD