Input parameters:

  Query = CsaV3_5G039250 (Len=392)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CsaV3_5G039250, Len=392):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MLGDQEESSEVGVDPNGNNELELHSVFWNQDYSCFAAGTSCGFRIYNCDPFKETFRRELGIGGFKIVEMLFRCNILALVG 80  
WD40-rpts              (_________________WD 1________________)   (____________________WD 2_____

Query       81 TGTNSLYPPNKVLIWDDYKSECIGEFSFRSEVRAVKLKREHFIVVLEHKIYVYTLKDVKLLDQIETVANPRGLCCLSHHV 160 
WD40-rpts      _______________)   (_______________WD 3______________)   (__________________WD 4

Query      161 NTFVLACPGVQRGQVHIEHFGLNMKKLFNAHDSHIACMTLTMDGLLLATASTKGTLIRIFNTLDGTLLQEVRRGVDRAEI 240 
WD40-rpts      __________________)(__________________WD 5__________________)   (_______________

Query      241 FSLALSPNVQWLAAASDKGTVHVFSLRVRVAGPDSSSDTNVIQGPTPFQQNSSNSIDTLVPLNTGSNPSSSLSFMRGVLP 320 
WD40-rpts      ___WD 6_________________)   (_________________WD 7________________)             

Query      321 RYFSSEWSFAQFHLPEVTQFIAAFGSQNTIIIAGMDGSFYKCSFDPVRGGQMLQQECIQFLKMEIGADRIDL 392 
WD40-rpts                                                                              

7 WD40-repeats found in QUERY=CsaV3_5G039250 (Len=392):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     9-47       4.24  289.70  0.00774       10.0%     40.24
  WD 2:  Seg  4    51-96       3.72  268.27  0.01500       15.0%     41.86
  WD 3:  Seg  8   100-134      3.44  256.82  0.02133       20.0%     43.78
  WD 4:  Seg 12   138-179      3.63  264.61  0.01679       12.5%     37.16
  WD 5:  Seg 16   180-221      7.54  426.19  0.00011       25.0%     55.26
  WD 6:  Seg 20   225-265      7.22  412.84  0.00017       25.0%     55.71
  WD 7:  Seg 23   269-307      4.11  284.43  0.00911        5.0%     -15.48

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    9-47     SE-VGVDPNG--NNELELHSVFWNQDYSCFA-------AGT-SCG-FRIYN
   WD 2   51-96     -F-KETFRRE--LGIGGFKIVEMLFRCNILALVGTGTNSLYPPNK-VLIWD
   WD 3  100-134    -S-ECIGEF---SFRSEVRAVKLKREHFIVV-------L---EHK-IYVYT
   WD 4  138-179    -V-KLLDQIE--TVANPRGLCCLSHHVNTFV----LACPGVQRGQ-VHIEH
   WD 5  180-221    FGLNMKKLFN--AHDSHIACMTLTMDGLLLA-------TASTKGTLIRIFN
   WD 6  225-265    -G-TLLQEVRRGVDRAEIFSLALSPNVQWLA-------AASDKGT-VHVFS
   WD 7  269-307    -R-VAGPDSS--SDTNVIQGPTPFQQNSSNS-------IDTLVPL-NTGSN

   WD40 Template    TG-ECLRTLS--GHTSGVTSVSFSPDGKRLV-------SGSEDGT-IKVWD