Input parameters:

  Query = CmaCh07G010450 (Len=1158)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CmaCh07G010450, Len=1158):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MKPNRKLKKADSSSKLVLEEIIGTITKNNNGLASNVNSANCVYLAGCVVVVHNVHSGTQSHLVVPHRLCKPLSCVAMSLD 80  
WD40-rpts                                                              (___________________WD 1

Query       81 GRFVAAGESGPQPAVFVWDLAGMAFLSELKGHLYGVACLAFSPDGKYLVSVGGYIYIWDWRTSMLLTKLKASSSCTAISS 160 
WD40-rpts      __________________)   (________________WD 2_______________)   (_________________

Query      161 VSFSSDSKSLLTAGKKHLKFWTITSPKTQFNLGTSSLSLHGKPVNLGAHQGSSFVSITSGLSTDGISGEVFPMYALTESG 240 
WD40-rpts      WD 3_________________)   (______________________WD 4______________________)     

Query      241 VLCLVNSGFSVTKSVSLKVDKCFAVSASSKLVACACSNGIVRLYDAESLQYEGSFTYSRSKQFDGENNMVHLMKDDGNDL 320 
WD40-rpts           (_________________WD 5_________________)                     (_____________

Query      321 RSLTVLPDAVALVIYGDHNLNIWDIHDVKQVTRSCVLVSHSACIWDIKVLCCENMHDPSLACAARGCSGGMSFATCSADG 400 
WD40-rpts      ___WD 6________________)              (_____________________WD 7________________

Query      401 TIRLWDLALEPDSEDAMDNQVRQATTTRLESAGIFDRETVEAGLNSRDFRSLAASSDGKYLAAGEPLELNFDLSDSIVDH 480 
WD40-rpts      _____)                                                                (_________

Query      481 SAAVTSVKISCNGHKIISCSADRSLIFRDFTTIDSGHKISRSHHQMASQGTVYDMAIDPKTDVVVTVGQDKKINTFDIAS 560 
WD40-rpts      ________WD 8________________)            (_______________WD 9_______________)   

Query      561 GKLIRSFRQEKDFGEPIKVAMDPSCSYLVCSYSNKSICVHDFVTGDMVVQGMGHGEAGMNSVVMLIILSQLRLFTQIGGD 640 
WD40-rpts      (__________________WD10_________________)   (___________________WD11____________

Query      641 GCIFVWRLPALLSSRMRQKMNEGSGPLFPGSMTQPMPFSQIMLYEKDGDEEKLHTTSSGNGYQLEDSEQDGFQGLHQGGA 720 
WD40-rpts      ______)                                                                         

Query      721 APGSTFRFSISRLPRWAQDKVTNSDSAQENLVSTPLQIILSASLLGVYGFIRKLAALWLLMTKKIHLYLQNFKIVLNTSL 800 
WD40-rpts                                                                                      

Query      801 DLLTQAPAAYPRTLLTIAILVVRLCLKKLLVQDAAKLPACNGCSSGQASNDLDAGGELTSSKVAIFYNSEPMSKREFHTR 880 
WD40-rpts                                                                                      

Query      881 MDEVHNGETEVQPSGNVKSEEQATGDNSPCSTNSEGDLFKLHFGSLSMSYKKNESSARKRYFSKYFVPGYLGSTKRLLRM 960 
WD40-rpts                                                                                      

Query      961 LPHESDCKTLQNVDVATNNSPSENPSSQVSAEEERDIARTTAETLPSTMSSHFSQNESYQGERDSKRVKLTKEGNDDSFP 1040
WD40-rpts                                                                                      

Query     1041 AASESQEQRTSCREVLLGLDAAAEKAVQFFSRLVTPGCHEDSLHDSGLELYDEAAKLLPSIIEKINEVAKLVQCKNKDKC 1120
WD40-rpts                                                                                      

Query     1121 ESTKDVIMTGFEPLLGTFAENLSEKVVEILKKNLGGNS 1158
WD40-rpts                                            

11 WD40-repeats found in QUERY=CmaCh07G010450 (Len=1158):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  5    57-99       5.40  337.66  0.00175       25.0%     58.71
  WD 2:  Seg  9   103-139      7.64  430.12  9.9e-05       47.5%     54.46
  WD 3:  Seg 13   143-182      5.66  348.51  0.00125       32.5%     55.01
  WD 4:  Seg 17   186-235      3.41  255.71  0.02207        7.5%     27.62
  WD 5:  Seg 22   246-285      6.64  388.88  0.00036       15.0%     44.99
  WD 6:  Seg 27   307-344      5.43  338.76  0.00169       20.0%     52.01
  WD 7:  Seg 32   359-406      5.71  350.57  0.00117       22.5%     51.43
  WD 8:  Seg 40   471-509      8.43  462.88  3.6e-05       27.5%     56.70
  WD 9:  Seg 45   522-557      6.64  388.91  0.00036       15.0%     47.64
  WD10:  Seg 48   561-601      6.66  389.65  0.00035       22.5%     57.95
  WD11:  Seg 52   605-647      6.90  399.69  0.00026       22.5%     56.50

Multiple sequence alignment of 11 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   57-99     -GTQ--------SHLVVPHRLC----K--PLSCVAM-----------SLDGRFVAAGESGPQPAVFVWD
   WD 2  103-139    -MAF--------LSELKGH--L----Y--GVACLAF-----------SPDGKYLVSV----GGYIYIWD
   WD 3  143-182    -SML--------LTKLKAS--S----SCTAISSVSF-----------SSDSKSLLTAG---KKHLKFWT
   WD 4  186-235    -PKT--------QFNLGTS--S----L--SLHGKPVNLGAHQGSSFVSITSGLSTDGIS--GEVFPMYA
   WD 5  246-285    NSGF--------SVTKSVS--L----K--VDKCFAV-----------SASSKLVACACS--NGIVRLYD
   WD 6  307-344    -NNM--------VHLMKDD--G----N--DLRSLTV-----------LPDAVALVIYG---DHNLNIWD
   WD 7  359-406    SHSACIWDIKVLCCENMHD--P----S--LACAARG-----------CSGGMSFATCSA--DGTIRLWD
   WD 8  471-509    -FDL--------SDSIVDH--S----A--AVTSVKI-----------SCNGHKIISCSA--DRSLIFRD
   WD 9  522-557    ------------SHHQMAS--Q----G--TVYDMAI-----------DPKTDVVVTVGQ--DKKINTFD
   WD10  561-601    -GKL--------IRSFRQE--K----DFGEPIKVAM-----------DPSCSYLVCSYS--NKSICVHD
   WD11  605-647    -GDM--------VVQGMGH--GEAGMN--SVVMLII-----------LSQLRLFTQIGG--DGCIFVWR

   WD40 Template    TGEC--------LRTLSGH--T----S--GVTSVSF-----------SPDGKRLVSGSE--DGTIKVWD