JobID: 6YJD61659505822 - WDRR: WD40 Repeat Recognition

Input parameters:

  Query = CmaCh20G010120 (Len=1631)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CmaCh20G010120, Len=1631):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MEWNTIHHLDLRHVGRGLKPLQPHAAAFHSHQALVAVAIGTYIVECDALTGCKISSIDIGARVVRMSYSPTSGHAVIAML 80  
WD40-rpts                                                      (__________________WD 1_________

Query       81 EDCTIRSCDFDSEQTCVLHSPERKIEQISSNTEVHLALTPLQPVVFFGFHKRMSVTVVGTVEGGRTPTKIKTDLKKPIVN 160 
WD40-rpts      ________)                                                       (_______________

Query      161 LACHPRLPLLYVAYADGLIRAYNIHTYAVHYTLQLDNTIKLIGAGAFAFHPTLEWIFVGDRRGTLLAWDVSTDKPSMIGI 240 
WD40-rpts      __WD 2________________)   (___________________WD 3__________________)(__________

Query      241 TQVGSQPITSVAWLPMLRLLVSLSKDGNLQVWKTRVILNPNRPPTQANFFEPAVIESIDIPRILSQKGGEAVYPLPRIKA 320 
WD40-rpts      _________WD 4___________________)                                               

Query      321 LEVHPKLNLAALLFANVSGADTVKNRAAYTREGRKQLFAVLQSARGSSASVLKEKLSSLGASGILADHQLQAQLQEHHLK 400 
WD40-rpts                                                             (__________________WD 5__

Query      401 GHSSLTISDIARKAFLYSHFMEGHAKDTPISRLPIITILDTKHHLKDVPVCQPFHLELNFFSKENRILHYPVRAFYVDGQ 480 
WD40-rpts      ________________)                                                               

Query      481 NLMAHNLCSGSDSIYKKLYTSIPGNVEFHPKCIVHSRKQRLFLVTFEFSGATNEVVLYWENTDSLTANSKCTTVKGRDAA 560 
WD40-rpts                                                                                      

Query      561 FIGPNENQFAILDDDKTGLALHILPGNASQENDNEKVLEDNHNTDTNNNSIRGPMPFMFETEVDRIFSTPLESTLMFASH 640 
WD40-rpts                                                                                      

Query      641 GDQIGLVKLVQGHRNSTADGNYIPTKGEGRKSIKLRLNEVVLQVHWQETLRGLVAGVLTTERVLMLSADFDILASSYTKY 720 
WD40-rpts                                                                                      

Query      721 DKGIPSYRSLLWIGPALIFSTATAISVLGWDGKVRTILSISMPYAVLAGALNDRLLLVTPTEINPRQKKGVEIRSCLVGL 800 
WD40-rpts                                                                                      

Query      801 LEPLLIGFATMQQRFEQKLDLSEILYQITSRFDSLRITPRSLDILAGGPPVCGDLAVSLSQAGPQFTQVLRGIYAIKALR 880 
WD40-rpts                                                                                      

Query      881 FSTALSVLKDEYLRSRDYPRCPPTSHLFHRFRQLGYACIKFGQFDSAKETFEVIADNESILDLFICHLNPSALRRLAQKL 960 
WD40-rpts                                                                                      

Query      961 EEDGTDSELRRYCERILRVRSTEWTQGIFANFAAESVVPKGPEWGGGNWEIKTPTNLKAIPQWELAAEVMPYMKTDDGSI 1040
WD40-rpts                                                                                      

Query     1041 PSIVADHIGVYLGTVKGRGSIVEVASEDRLVRSFPPAVGSIDKSTALQIPLAKSISNKSKASFDGESKDNLMGLETLMKK 1120
WD40-rpts                                                                                      

Query     1121 SSSSASADEQAKAEEEFKKTMYGNAHDGSSSDEENVSKTRKLHIRIRDKPVASPTVDVKKIKEATMQFKLGEGFGPPISR 1200
WD40-rpts                                                                                      

Query     1201 TKSLTGSTQDLVETLSQPPATTASTAPIVSATSTDPFGSNSFMQPAPVFLPSTQGTGTGVGVAARPIPEDFFQNTIPSLQ 1280
WD40-rpts                                                                                      

Query     1281 IAASLPPPGTYLSQLDPASIGVESNKVASNQANVPEVNVGLPDGGVPPQATPQATQQLAVSFEQIGLPDGGVPPQSSGQP 1360
WD40-rpts                                                                                      

Query     1361 TVMLPTVQPVQPAQPLLSSQPLDLSFLGLPNSVDSVKPTPPQAASVRPGQVPRGAAASVCFKTGLAHLEQNNLSDALSCF 1440
WD40-rpts                                                                                      

Query     1441 DESFLALAKDHSRGADIKAQATICAQYKIAVTLLQEIGRLQKVQGPSALSAKDEMGRLSRHLGSLPLLAKHRINCIRTAI 1520
WD40-rpts                                                                                      

Query     1521 KRNMEVQNFSYSKQMLELLFSKAPASKQDELRSLIDICIQRGLMNKSIDPLEDPSMFCAATLSRLSTIGYDICDLCGAKF 1600
WD40-rpts                                                                                      

Query     1601 SALTSPGCIICGMGSIKRSDALAEPVPSPFG 1631
WD40-rpts

5 WD40-repeats found in QUERY=CmaCh20G010120 (Len=1631):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  5    49-89       5.12  325.97  0.00252       27.5%     49.00
  WD 2:  Seg 14   145-183      5.24  330.92  0.00216       12.5%     51.98
  WD 3:  Seg 18   187-229      5.41  338.03  0.00173       25.0%     54.15
  WD 4:  Seg 22   230-273      7.86  439.37  7.5e-05       30.0%     52.02
  WD 5:  Seg 31   376-417      4.89  316.70  0.00335       10.0%     36.55

Multiple sequence alignment of 5 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   49-89     LT----GC--KISSIDIGA----RVVRMSYSPTSGHAVIAMLEDCTIRSCD
   WD 2  145-183    -R----TP--TKIKTDLKK----PIVNLACHP-RLPLLYVAYADGLIRAYN
   WD 3  187-229    -Y----AV--HYTLQLDNTIKLIGAGAFAFHP-TLEWIFVGDRRGTLLAWD
   WD 4  230-273    VSTDKPSM--IGITQVGSQ----PITSVAWLP-MLRLLVSLSKDGNLQVWK
   WD 5  376-417    LS----SLGASGILADHQL----QAQLQEHHL-KGHSSLTISDIARKAFLY

   WD40 Template    TG----EC--LRTLSGHTS----GVTSVSFSP-DGKRLVSGSEDGTIKVWD