Input parameters:

  Query = CmaCh01G013240 (Len=595)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CmaCh01G013240, Len=595):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MGGLEDEEPASKRMKVSLEKLKGLSNGSAVVERLGGSSRDLMARPLQSEGDSGDVIGTKGVIRRVEFVRIIANALYSLGY 80  
WD40-rpts                                                                                      

Query       81 EKTGAYLEEESGIPLYSPAVNVLMQQIHDGKWDESVETLQKIGLPDEHVVRSASVLVLEQKFFELVERDEVTEALRTLRT 160 
WD40-rpts                                                                                      

Query      161 EIAPYHINEHRIRELSSCLVAPSMRAQVNSYSQQSAKAKARTQLLEELQKLLPASLMIPEKRLEYLVERALLLQRDACTF 240 
WD40-rpts                                                                                      

Query      241 HNSLSNEMSLYTDHDCGKNQIPSQTLQVLQDHDDEVWFLQFSHHGKYLASSSSDRSAIIWEVDLKGRLSLKHKLLGHEQP 320 
WD40-rpts                            (_________________WD 1________________)(__________________

Query      321 ISMVSWSPDDSQLLTCGVEEAVRRWEVATGECLHVYEKAGLGLVSCGWFPDGKHILAGVNDKSICMWELDGNELEGWKGQ 400 
WD40-rpts      __WD 2___________________)   (_________________WD 3________________)   (________

Query      401 RTLKISDLEITNDGKKIISICRETAILLLDRELLIDKLIEEDQTITSFQLSRDNKFLLVNLMNQEIHLWSLEGEAELVTT 480 
WD40-rpts      _________WD 4________________) (_________________WD 5________________)    (_____

Query      481 YTGHKRTRFVIRSCFGGLNQAFIASGSEDSLVYIWHRGTGEVIEALEGHSGSVNCVSWNPANPHMLASGSDDRTIRIWGL 560 
WD40-rpts      _____________WD 6__________________)   (_________________WD 7_________________) 

Query      561 RGVDAVKCKNNIEQYSNSNGGILHYSNGNGNGGTC 595 
WD40-rpts                                         

7 WD40-repeats found in QUERY=CmaCh01G013240 (Len=595):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  3   263-301      8.69  473.83  2.6e-05       32.5%     52.48
  WD 2:  Seg  7   302-346      8.65  471.84  2.7e-05       25.0%     54.61
  WD 3:  Seg 11   350-388      9.45  504.93  9.7e-06       35.0%     55.99
  WD 4:  Seg 15   392-430      7.95  442.96  6.7e-05       20.0%     58.07
  WD 5:  Seg 18   432-470      6.86  397.91  0.00027       22.5%     48.33
  WD 6:  Seg 22   475-516      6.94  401.21  0.00024       27.5%     56.68
  WD 7:  Seg 26   520-559      8.95  484.21  1.9e-05       42.5%     54.50

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  263-301    -S-----QTLQVLQDHDDE---VWFLQFSH-HGKYLASSSSDRSAIIWE
   WD 2  302-346    VDLKGRLSLKHKLLGHEQP---ISMVSWSP-DDSQLLTCGVEEAVRRWE
   WD 3  350-388    -G-----ECLHVYEKAGLG---LVSCGWFP-DGKHILAGVNDKSICMWE
   WD 4  392-430    -N-----ELEGWKGQRTLK---ISDLEITN-DGKKIISICRETAILLLD
   WD 5  432-470    -E-----LLIDKLIEEDQT---ITSFQLSR-DNKFLLVNLMNQEIHLWS
   WD 6  475-516    -A-----ELVTTYTGHKRTRFVIRSCFGGL-NQAFIASGSEDSLVYIWH
   WD 7  520-559    -G-----EVIEALEGHSGS---VNCVSWNPANPHMLASGSDDRTIRIWG

   WD40 Template    TG-----ECLRTLSGHTSG---VTSVSFSP-DGKRLVSGSEDGTIKVWD