Input parameters:

  Query = CsaV3_3G022880 (Len=873)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CsaV3_3G022880, Len=873):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MIKVDVGELVILVFWVLAIFLTLILGMRNDGTLKQQGTVARSGRAHEFLSTSFRAFSSYMKIVSAGASTVARSAASVASS 80  
WD40-rpts                                                                                      

Query       81 LVDKDDEANASQVNWAGFDKLEWDDNVIRQVLLLGIRSGFQVWDVEEANNVQELVCRYDGSVSYMQVLPRLIPSMRSGDK 160 
WD40-rpts                                                                                      

Query      161 FAESRPLIVLSAYGSIAANFNIQDRLASSGNATIPKSQEVVDGNFMPTFVRFYSLKSQTYVHELKFRSAVYSVKCSPLVV 240 
WD40-rpts                                                                                      

Query      241 AISLATQIHCINATTLEKEHIILTNPVVSGFPGSGGGMGYGPLALGPRWLAYSGSPILLSNTGRVVPQHLKPSASFSHSS 320 
WD40-rpts                                                                                      

Query      321 SNGSLVAHYAKESSKHLAAGIVTLGDKGIKKLSRYYSELLPESNNSLQSGAQGLKGIGTLNGHMADADSIGMAIVKDIIS 400 
WD40-rpts                                                                                      

Query      401 KAVITQFKAHKSPISALCFDPSGTILVTASVQGHSINVFKIMPSSCSKSSISSTAASYSHLYRLQRGFTNAVNFPSADII 480 
WD40-rpts      (_________________WD 1_________________)                                        

Query      481 ARNGGPVVPARQTVRRVDSGLHMPSKQNQCTTGSPLTLSAVTRIHHGSNGWRGTVSSAAAAATGKMGIVSGAIASAFHEC 560 
WD40-rpts                                                                                      

Query      561 KGNTVHVDNGSSEVRYHILVFSPSGSMIQYALRVGLDSTVVLPRSSTALELVSELDSRLVVEAIQKWNISQKQNRRSQDN 640 
WD40-rpts                                                                                      

Query      641 SIDIYGDNGGFNCNKNYCEEMNGNPVLEAGGNIFKTKACREEQYHLYISEAELQMHAARTPLWTKPEIYFQVMARDGVKI 720 
WD40-rpts                                                                                      

Query      721 DEIDHPGELDIERIPTRMIEARSKDLVPVFDYLQSSKISQPRYLNSNSDQLLLQQKSGQFENGRQSWRSAANPHDSVVGN 800 
WD40-rpts                                                                                      

Query      801 GREVTGRHGYKRVTETKGIVNEPECPRSQTQFSNVNSCTESISMESQPKSVNNHHKSGLRVENHFEDLGDEFE 873 
WD40-rpts                                                                               

1 WD40-repeats found in QUERY=CsaV3_3G022880 (Len=873):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 18   401-440      4.13  285.37  0.00885       27.5%     52.49

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  401-440    KAVITQFKAHKSPISALCFDPSGTILVTASVQGHSINVFK

   WD40 Template    GECLRTLSGHTSGVTSVSFSPDGKRLVSGSEDGT-IKVWD