Input parameters:

  Query = CsaV3_3G000310 (Len=1023)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CsaV3_3G000310, Len=1023):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MFVKKLVGKATRKPENTFDSLKGSQVEPCLAFHNGIPSGSITSAYDPIQKILALSTRDGRIKLFGKDNSQALLESKEAIP 80  
WD40-rpts               (_________________________WD 1_________________________)  (____________

Query       81 SKFLQFMENQGFLLNVTSKNEIEVWDIDRKLLAHVHVFEQEITSFTILQQTPYIYVGDYLGNVSVLKLDQSVCNIIQMKY 160 
WD40-rpts      _____WD 2________________)  (_________________WD 3________________)             

Query      161 IIPVSASRGNPAEATSDISLTHILPQPTTEFKRVLLIFSDGFITLWEIKESKSIFITGGNSMLSPYQEAKKVTSACWACP 240 
WD40-rpts             (_________________WD 4_________________)          (__________________WD 5

Query      241 LGSKVAVGYSNGDVLIWAILHGHNPKAESLAENSNRTGPLFKLNLGYKLDKVPIASLRCNYVDAKASRLYVMGAASNSLQ 320 
WD40-rpts      _________________)                                                              

Query      321 VILLNEQIESRMIKLGLQLSEPSIDMEIISSSSDHNKNKHDYLLLLGKSGCVYTYDDCSIEKYLLQQSQSRSANSLPKEA 400 
WD40-rpts                                                                                      

Query      401 MLKIPFIDSHITVASFFTNISCSPYASDEDYIQRTKDIPSLFLSESKSKDVTYLDTVQFGGFSKVENLYISGHNDGSINF 480 
WD40-rpts                                                 (_________________WD 6_______________

Query      481 WDASCPIFIPIYSLQQQSEDDFSLSGIPVTALHFDGSSQILVSGDHSGMVRVFKFRPEPYATDNSFMPFQGSTKKRNSHI 560 
WD40-rpts      _)             (_________________WD 7________________) (________________________

Query      561 IQSVKLVKVDGSILAINISPRSNHLAVGSDRGYVSLFSIQGPDLIYQKRITSEISTGIISLQFESCSLQGFDKNVLMIST 640 
WD40-rpts      _____WD 8____________________________)      (____________________WD 9___________

Query      641 KDSSILALDGETGNPLSASMVHPKKPSRALFMQILYGQDSSTRGSVISNDLELGKGSNPAVDSVPKQSLVLLCSEKAAYI 720 
WD40-rpts      ________)                                                                       

Query      721 FSFVHAIQGVKKVLYKKKFHSTCCWASTFYSNTDVGLLLVFSTGKIEIRSLPELSLLKETSVRGFKYSPPKVNSLPESII 800 
WD40-rpts               (__________________WD10_________________)   (_________________WD11_____

Query      801 CSSKDGELLMVNGDQEIFIVSVLCHKKIFRILDSVSHIYRKDYMLSQEVTTAHKEKKKGIFTSVFQEIAGNKAKQAPDVE 880 
WD40-rpts      ___________)                                                                    

Query      881 IEDTRESIEELSIILSSSNFHGDFKTVDGSEKLVANEDKLALDIDDIDLEDPVEKPKEQSMLGSLNKQKLASTFNSFKGK 960 
WD40-rpts                                                                                      

Query      961 LKQMKKNSGKEEQPDWNAGDNKVGAVDQIKKKYGFSSASDTTSVAKMTERKLQENVTKLQFYV 1023
WD40-rpts                                                                     

11 WD40-repeats found in QUERY=CsaV3_3G000310 (Len=1023):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1    10-65       5.89  357.89  0.00093       30.0%     53.04
  WD 2:  Seg  5    68-106      6.06  365.07  0.00075       17.5%     55.66
  WD 3:  Seg  9   109-147      5.70  350.20  0.00119       15.0%     55.84
  WD 4:  Seg 14   168-207      5.45  339.93  0.00163       20.0%     29.34
  WD 5:  Seg 18   218-258      6.17  369.35  0.00065       17.5%     47.54
  WD 6:  Seg 33   444-482      6.74  393.24  0.00031       27.5%     28.92
  WD 7:  Seg 37   496-534      6.91  400.20  0.00025       25.0%     46.69
  WD 8:  Seg 40   536-598      5.52  342.60  0.00150       22.5%     44.57
  WD 9:  Seg 44   605-649      4.72  309.58  0.00418       25.0%     47.06
  WD10:  Seg 52   730-770      3.08  241.87  0.03372       17.5%     46.50
  WD11:  Seg 56   774-812      4.22  289.06  0.00789       12.5%     18.85

Multiple sequence alignment of 11 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   10-65     AT-RKPENTFDSLKGSQVEPCLAF-----------------------HNGIPSGS-ITSAY------DPIQKILALSTRDGRIKLFG
   WD 2   68-106    -N-S----------------QALL-----------------------ESKEAIPS-KFLQF------MENQGFLLNVTSKNEIEVWD
   WD 3  109-147    -R-K----------------LLAH-----------------------VHVFEQEI-TSFTI------LQQTPYIYVGDYLGNVSVLK
   WD 4  168-207    RG-N----------------PAEA-----------------------TSDISLTH-ILPQP------TTEFKRVLLIFSDGFITLWE
   WD 5  218-258    GGNS----------------MLSP-----------------------YQEAKKVT-SACWA------CPLGSKVAVGYSNGDVLIWA
   WD 6  444-482    -S-E----------------SKSK-----------------------DVTYLDTV-QFGGF------SKVENLYISGHNDGSINFWD
   WD 7  496-534    -Q-Q----------------SEDD-----------------------FSLSGIPV-TALHF------DGSSQILVSGDHSGMVRVFK
   WD 8  536-598    RP-E----------------PYATDNSFMPFQGSTKKRNSHIIQSVKLVKVDGSI-LAINI------SPRSNHLAVGSDRGYVSLFS
   WD 9  605-649    -I-Y----------------QKRI-----------------------TSEISTGI-ISLQFESCSLQGFDKNVLMISTKDSSILALD
   WD10  730-770    VK-K----------------VLYK-----------------------KKFHSTCCWASTFY------SNTDVGLLLVFSTGKIEIRS
   WD11  774-812    -L-S----------------LLKE-----------------------TSVRGFKY-SPPKV------NSLPESIICSSKDGELLMVN

   WD40 Template    TG-E----------------CLRT-----------------------LSGHTSGV-TSVSF------SPDGKRLVSGSEDGTIKVWD