Input parameters:

  Query = CmaCh14G011090 (Len=392)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CmaCh14G011090, Len=392):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MNAPASHEEEEDHGEVFLDESDIIQEVVIDDEDLPHAVDEEGSDDEFVDDADDSVHTFTGHTGEVYTVACSPIDAMLVAT 80  
WD40-rpts               (___________________WD 1__________________)_________________WD 2_______

Query       81 GGGDDKGFMWKIGRGDFAQELTGHKDSVSSLAFSADGQLLASGGFDGLIQIWDISSGNLKCTLEGPGGGIEWVRWHPRGH 160 
WD40-rpts      __________)   (_________________WD 3________________)   (_________________WD 4__

Query      161 LVLAGSEDSTVWMWNADRGVYLNMFSGHGASVTCGDFTPDGKIICTGSDDATMRIWNPKSGENIHVVRGHPYHTEGLTAL 240 
WD40-rpts      ______________)   (_________________WD 5________________)   (__________________W

Query      241 ALSSDSTLALSGSNDGSVHIVNIATGKVVNSLVSHSDSIECIGLAPSSPWAATGGMDQKLIIWDLRQSSPRSICEHEDGV 320 
WD40-rpts      D 6__________________)   (_________________WD 7________________)(_______________

Query      321 TCLTWIGTSRYVVTGCVDGRVRIWDSLLGECVRTFTGHTDAIQSLSVSANHEYLVSVALDNTARVFEIAEYR 392 
WD40-rpts      ___WD 8_________________)   (_________________WD 9________________)     

9 WD40-repeats found in QUERY=CmaCh14G011090 (Len=392):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1    10-52       5.54  343.33  0.00147       12.5%     22.04
  WD 2:  Seg  4    52-91       8.19  453.00  4.9e-05       30.0%     54.65
  WD 3:  Seg  8    95-133     10.62  553.20  2.2e-06       45.0%     57.02
  WD 4:  Seg 12   137-175      9.81  520.08  6.1e-06       35.0%     57.91
  WD 5:  Seg 16   179-217     10.59  551.91  2.3e-06       42.5%     56.24
  WD 6:  Seg 20   221-262      8.68  473.35  2.6e-05       35.0%     57.87
  WD 7:  Seg 24   266-304      9.43  504.28  9.9e-06       20.0%     58.09
  WD 8:  Seg 28   305-345      9.24  496.38  1.3e-05       27.5%     57.05
  WD 9:  Seg 32   349-387     10.29  539.68  3.3e-06       42.5%     57.93

Multiple sequence alignment of 9 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   10-52     EED-HGEVFLDE---SDIIQEVVIDD-EDLPHAVDEEGSDDEFVDDAD
   WD 2   52-91     -DD-SVHTFTGH---TGEVYTVACSPIDAMLVA---TGGGDDKGFMWK
   WD 3   95-133    -GD-FAQELTGH---KDSVSSLAFSA-DGQLLA---SGGFDGLIQIWD
   WD 4  137-175    -GN-LKCTLEGP---GGGIEWVRWHP-RGHLVL---AGSEDSTVWMWN
   WD 5  179-217    -GV-YLNMFSGH---GASVTCGDFTP-DGKIIC---TGSDDATMRIWN
   WD 6  221-262    -GE-NIHVVRGHPYHTEGLTALALSS-DSTLAL---SGSNDGSVHIVN
   WD 7  266-304    -GK-VVNSLVSH---SDSIECIGLAP-SSPWAA---TGGMDQKLIIWD
   WD 8  305-345    LRQSSPRSICEH---EDGVTCLTWIG-TSRYVV---TGCVDGRVRIWD
   WD 9  349-387    -GE-CVRTFTGH---TDAIQSLSVSA-NHEYLV---SVALDNTARVFE

   WD40 Template    TGE-CLRTLSGH---TSGVTSVSFSP-DGKRLV---SGSEDGTIKVWD