WDRR: WD40 Repeat Recognition
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| JobID: 6H6AS1477639618 Submitted: 2016-10-28 15:26:58 You can bookmark this page for further accessing the result in the future. Results on this server will be retained for 30 days. Job status: [Done] Total run time: 261611505 seconds. [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = Bmgn7264 (Len=1360) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (Bmgn7264, Len=1360): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MTLYIDTKLSFSDENVVSTVAAWHPSLPFLAIGSYNQEKGGFATIFQENGLPLEGCEWPILSSNQVTALAWHPTRRLLVV 80
WD40-rpts (___________________WD 1_________
Query 81 GWDGGELYIWLEYSWARLEAPHNAALTNIAFSSGGGRLLASDAAGSLSGWQSSSGAPLTSFHHQLGEVITHISFCTPRPS 160
WD40-rpts __________) (_________________WD 2________________)
Query 161 TESSIRGLARAAVAGDENALDALAAWRPRTTAKIREGSQPDNHSCYAVQDNGVILYIDQTGACSEVLNAPGSIMFMGIIS 240
WD40-rpts (_________________WD 3________________)(_________________WD 4
Query 241 NIYLLVAWESGGALSLTRFLTSDEGSLTTDTHVRMAARNGQSIVLAGNFFVAVITGDNVVRVWDSETGDNDVLLNENENI 320
WD40-rpts _________________) (________
Query 321 SEGDTFSSITYCNLSDTLCCGTAQGNLYLWRRDYRNIWKLISSTSVKGTIKGVSWGSEGLMNPLLHVNCITSAYILREQP 400
WD40-rpts _________WD 5_________________)
Query 401 VCWGYSPNISMVQKSANEIFINHINENTTIIKSNVTIRAFAFRDQYIAIGDGTDVQIWMCNKDNDLNFSMIRTFPWKTDV 480
WD40-rpts
Query 481 LILYNDILVGIINPHIECHSVTGVRLGSLPTSEGEGEPISITQTNKYVIIVTLDGTLKLAEITKKGLKMPCPPKNCYQVI 560
WD40-rpts (_________________WD 6_________________)
Query 561 EDFGEVMRASVSCNGRYICLSVANSGLAPDPRIYLWDAANDIITNILIAESSKPPYQTVPIAIIWDNSDPRIVAVHMRSA 640
WD40-rpts
Query 641 ESDKIYLFFCHEGKLHEYVNWCSATEDYVQTDFILCSLCSPHVVILSQQNIKRLLMSEFKDVNDCDTSTVKQVLDFLYYT 720
WD40-rpts
Query 721 TTGNLEKAVVVGSSISGGTSQVIWYSLAKMCVSLKRPDVGSICLSKMENIKGALMMRKVMNDNSMDDNCKVAVLAVNLGM 800
WD40-rpts
Query 801 IEEAEKLFREAQRPDLITRLVSAKEGGLLQIIEGNKDGENMLLIKSAQHKLAKHLWSNGETNASIKLFESAGTLVPHVPR 880
WD40-rpts
Query 881 MLIAQGQTSVLAQHVANSNDTNLITWWGHYLESLGDLDGALSAYARANDFGEQTRLLCHMDRIDEAEKLCQNNRTAVYQM 960
WD40-rpts
Query 961 ARYFEMQPDKTENAVKMYMKSGAVSSAVRVAAEASAWNLVWRAGSSSPTHALYAASILENAGQIEQAIALYQKAGKIHMA 1040
WD40-rpts
Query 1041 LKLALDSGDTNAMVAAVESLGDRVDPEVAHTLASHLRKANHHSHAAALLATAGKYEEALELVEQSSAPLSEELSERLAAP 1120
WD40-rpts
Query 1121 AGTSGRDVLLRRLADVLGTRGLYHQAAKRLAHAGDKAGAMRWLMRSGDADRIATFAAATRDRNAQLMAADYLRRHADWRT 1200
WD40-rpts
Query 1201 RPDLMRHILHFYTRAKAYSKLAAFYAECAKTEVDEYDNYEKALEALKEAVRCLAKCTDTETGSQTMALQEQSTLVKRFLD 1280
WD40-rpts
Query 1281 VKKIFESGEISAGVTSGQQLLRAVSGRSGLVTEEKVLRLLLRHAPDHGDFEQKLRVIQRDSTDDDRQSTASPNQSIEEIV 1360
WD40-rpts
 6 WD40-repeats found in QUERY=Bmgn7264 (Len=1360): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 4 48-91 5.32 334.40 0.00194 22.5% 44.72 WD 2: Seg 6 93-131 6.23 372.10 0.00060 25.0% 49.15 WD 3: Seg 13 180-218 4.83 314.34 0.00361 17.5% 34.77 WD 4: Seg 16 219-258 3.82 272.50 0.01317 7.5% 52.32 WD 5: Seg 24 312-351 5.57 344.82 0.00140 12.5% 43.09 WD 6: Seg 42 502-541 6.02 363.46 0.00079 25.0% 47.46Multiple sequence alignment of 6 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 48-91 ENGLPLEGCEWPILSSNQVTALAWHPTRRLLVVGWDGGELYIWL WD 2 93-131 -Y----SWARLEAPHNAALTNIAFSSGGGRLLASDAAGSLSGWQ WD 3 180-218 -L----DALAAWRPRTTAKIREGSQPDNHSCYAVQDNGVILYID WD 4 219-258 QT----GACSEVLNAPGSIMFMGIISNIYLLVAWESGGALSLTR WD 5 312-351 VL----LNENENISEGDTFSSITYCNLSDTLCCGTAQGNLYLWR WD 6 502-541 TG----VRLGSLPTSEGEGEPISITQTNKYVIIVTLDGTLKLAE WD40 Template TG----ECLRTLSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD |
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