Input parameters:

  Query = vps13p (Len=1592)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (vps13p, Len=1592):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MAFWLPQNIQKRLLLYVLQQISLFSNIDLSNLDVSIGSKSHFSFHDVNLSLDDLNIPNVQINEGIVDELVLKLTVSGGVE 80  
WD40-rpts                                                                                      

Query       81 IDGSGLRFIMTPLYSSGSQELHSDFLVKSIQDLTNSMLQFSDPLTTYNRYKEDDISSSDSSSDLNSNIEASKPAANGSYT 160 
WD40-rpts                                                                                      

Query      161 LQNMRNKALNVALAKLKIALKDVTIRFIVNDRDPSDNTVEVHLESIQLITTDANLRHINIENITISSIQKQAVPDSPVHP 240 
WD40-rpts                                                                                      

Query      241 FNNDDLSQSVYLSKMEATSLYMSAMEEQSNEDPSEPQVTQEEQENDKCKESLMEINNLNIAFKGLSSVNDLRMSNIVIDI 320 
WD40-rpts                                                                                      

Query      321 QDVHLAIHKIVEIKNSTLKNIIDIIVTHLDANESFSCQDSQSPSPDKQEPSALSSVDIKCIYLNLGQDITVILKSFKLEQ 400 
WD40-rpts                                                                                      

Query      401 KENNSLAFSLGSFYSNSSPLTISHKTKPLLTGEQTPQSIALNMGDELDIIISHDGIAHFFKIFQFVSKCMSFYQNKSKGM 480 
WD40-rpts                                                                                      

Query      481 MPQIALDTKRTVQLTSKAVKLSLKFPYFLLCFQVSPFIYDSNRELYIELVDVFKKLPSRCTKILTMSSITISNLQSPLQL 560 
WD40-rpts                                                                                      

Query      561 GSYDDTLKEALIYSSVHAIIKEVIFNEEYSGIVQLVEDISAFGKLFTDSKNSECTGKSKSKRGSFLQRSVRVLNSSRFVY 640 
WD40-rpts                                                                                      

Query      641 KQSLSANFSLKIDSMKLKVSEIIGPQFGSVEALLSNNFFAITDDSQIVYFTKNLKVERKTPSLLEPQEIMSVVLNKAVNE 720 
WD40-rpts                                                                                      

Query      721 PVLYVHRRANGKLKVIFNNIRIHYYARWLEILKKNIGPDNASSKDEPVAQKLSKKQPTSGFPWELKCLDCSLILHPFRLK 800 
WD40-rpts                                                                                      

Query      801 SVMVIVLDNLTTGGSSFIPQAKLLSKANTLFLIDDYQNFKIQKDKNWPSLINFYAGQGFSAIGKIDTLNFLINKSDGALL 880 
WD40-rpts                                                                                      

Query      881 LDCKIEQVGLSLCADSFQTFCQLCIDLKYPQTFPDEEKFRTQLKNPIDVFKDIDCDLFNSAFIRENNHQNDYDSVHLVDS 960 
WD40-rpts                                                                                      

Query      961 FLDKTHEFNNGARSKLSSQGSYEMDSSSGTATGGILLPHESYLDSAQPKEEDTPPIASKEQERDVDIRGSIDIEKVVIKL 1040
WD40-rpts                                                                                      

Query     1041 FDGYDWKYTRKFIANTVEKLDKELSKAEASSSKSNVPQSEANIFDSIYISANKNNVTDLRRNLDGEIQGVQNSFSDVSKV 1120
WD40-rpts                                                                                      

Query     1121 NLRPSKHYKALIQLNKVHVNLKNYRVDEPDESNSDNSTDVLNRCVVSVYEFEIIDNVPTSTWNKFVTLLKHEPWPHSSPM 1200
WD40-rpts                                                                                      

Query     1201 FLLDLEFIRPIDFLQAVELVMQLNVAPLRLHVDQDTLEFLIRFLGFKDKRFELIDEYPDIVFIQKFSTNSIKLRLDYKPK 1280
WD40-rpts                                                                                      

Query     1281 KVDYAGLRSGQTSELMNFFTLDGSKIILKSVVLYGLNGFDELNNKLKAIWTPDITKKQLPGVLEGLAPVRSFMAIGSGVK 1360
WD40-rpts                                                                                      

Query     1361 TLVTVLMSEYRQEGHLGRSLKKGGNVFLKTTTGDFVKLGVKLTSGTQAILENTEELFGGVGSNGRVYDASKFGSADGADS 1440
WD40-rpts                                                                                      

Query     1441 DTAAVLDLDTLFEEDQLVGSKYSRIRDHEPTAVVIDMSSPGDHNEPTIVSLYADQPLDLPTGLKEAYSSLEKHMHIAYDA 1520
WD40-rpts                                                                                      

Query     1521 VWRAKGQMKDDKRGGPSAAAVYVARAAPVAIIRPLIGATEAVSKTLQGIANQVDKTHNEQINDKYKSNRTDS 1592
WD40-rpts                                                                              

No WD40-repeats found in QUERY=vps13p (Len=1592)!