Input parameters:

  Query = CsaV3_6G047060 (Len=332)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CsaV3_6G047060, Len=332):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MGGSQSEREEKVSLELTEEILQSMEVGMTFRDYNGRISSMDFHKTSSYLVTASDDESIRLYDVASATCLKTINSKKYGVD 80  
WD40-rpts                             (_________________WD 1________________)   (______________

Query       81 LVCFTSHPTTVIYSSKNGWDESLRLLSLNDNKYLRYFRGHHDRVVSLSLCARKECFISGSLDRTVLLWDQRAEKCQGLLR 160 
WD40-rpts      ____WD 2__________________)   (_________________WD 3________________)(__________

Query      161 VQGKPATAYDEQGVVFAIAFGGYIRMFDARKYEKGPFDIFSVGEDLSDANIVKFSNDGRLMLLTTSDGHIHVLDSFRGTL 240 
WD40-rpts      _______WD 4________________)(____________________WD 5____________________)   (__

Query      241 LSTYNVKPISRNLTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSTEMEPPVIKWAPGSLMFATGSSELSFWIP 320 
WD40-rpts      ________________WD 6__________________)   (_________________WD 7________________

Query      321 DLSKLGAYVDRK 332 
WD40-rpts      )           

7 WD40-repeats found in QUERY=CsaV3_6G047060 (Len=332):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    24-62       9.43  504.07  1.0e-05       25.0%     51.92
  WD 2:  Seg  6    66-107      7.96  443.45  6.6e-05       22.5%     56.31
  WD 3:  Seg 10   111-149      9.87  522.33  5.7e-06       35.0%     57.81
  WD 4:  Seg 14   150-188      5.11  325.80  0.00253       12.5%     47.78
  WD 5:  Seg 18   189-234      8.53  467.17  3.1e-05       27.5%     56.34
  WD 6:  Seg 22   238-279      8.66  472.40  2.7e-05       35.0%     59.01
  WD 7:  Seg 26   283-321      8.51  466.01  3.3e-05       12.5%     51.38

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   24-62     -ME------VGMTFRDYN---GRISSMDFHKTSSYLVTASD---DESIRLYD
   WD 2   66-107    -AT------CLKTINSKK---YGVDLVCFTSHPTTVIYSSKNGWDESLRLLS
   WD 3  111-149    -NK------YLRYFRGHH---DRVVSLSLCARKECFISGSL---DRTVLLWD
   WD 4  150-188    QRA------EKCQGLLRV---QGKPATAYDEQGV-VFAIAF---GGYIRMFD
   WD 5  189-234    ARKYEKGPFDIFSVGEDL---SDANIVKFSNDGRLMLLTTS---DGHIHVLD
   WD 6  238-279    -GT------LLSTYNVKPISRNLTLEASFSPEGMFVISGSG---DGSVYAWS
   WD 7  283-321    -GK------EVASWMSTE---MEPPVIKWAPGSLMFATGSS---ELSFWIPD

   WD40 Template    TGE------CLRTLSGHT---SGVTSVSFSPDGKRLVSGSE---DGTIKVWD