Input parameters:

  Query = CmaCh04G017290 (Len=581)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CmaCh04G017290, Len=581):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MDLLQSYTDQNNEDGSPEQVASSPEASPPRLLPAKTSAPKVDDTMLALTVANANQTLSKPIDPTQHLVAFNPTYDQLWAP 80  
WD40-rpts                                                                                      

Query       81 IYGPSHPYAKDGIAQGMRNHKLGFVEDASIEPFVFDEQYNTFHKYGYAADPSASAGNNYIGDMEALQKNDAISVYNIPQH 160 
WD40-rpts                                                                                      

Query      161 EQKKRKIEKKKEMSENEDVEEDLNLAEVDNPASDVWLMKNRKSPWSGKKEGLETELTEEQKKYAEEYAKKKGEEKGSEKG 240 
WD40-rpts                                                                                      

Query      241 EVTADKSTFHGKEERDYQGRSWISPPKDAKATNDHCYIPKRLVHTWSGHTKGVSAIRFFPKHGHLILSAGMDTKVKIWDV 320 
WD40-rpts                             (_________________________WD 1_________________________) 

Query      321 FNSGKCMRTYMGHSQAVRDISFCNDGSKFLTAGYDKKIKYWDTETGQVISTFSTGKIPYVVKLNPDDDKQNILLAGMSDK 400 
WD40-rpts         (_________________WD 2________________)   (__________________WD 3____________

Query      401 KIVQWDMNTGQITQEYDQHLGAVNTITFVDNNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISVHPNTNWLAA 480 
WD40-rpts      _____)   (_________________WD 4________________)(___________________WD 5________

Query      481 QSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHDGVCIGCEW 560 
WD40-rpts      __________)      (__________________WD 6_________________)   (_________________W

Query      561 HPLEQSKVATCGWDGLIKYWD 581 
WD40-rpts      D 7_________________)

7 WD40-repeats found in QUERY=CmaCh04G017290 (Len=581):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  5   264-319      7.93  442.04  6.9e-05       37.5%     56.80
  WD 2:  Seg  9   324-362     10.27  539.08  3.4e-06       40.0%     57.24
  WD 3:  Seg 13   366-406      6.00  362.32  0.00081       30.0%     52.61
  WD 4:  Seg 17   410-448      9.31  499.07  1.2e-05       25.0%     57.02
  WD 5:  Seg 21   449-491      6.94  401.24  0.00024       22.5%     50.38
  WD 6:  Seg 24   498-538      6.82  396.51  0.00028       32.5%     47.75
  WD 7:  Seg 28   542-581      7.33  417.41  0.00015       27.5%     53.61

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  264-319    SPPKDAKATNDHCYIPKRLVHTWS-GHTKG--VSAIRFFP-KHGHL-ILSAGMDTKVKIWD
   WD 2  324-362    -G---------------KCMRTYM-GHSQA--VRDISFCN-D-GSK-FLTAGYDKKIKYWD
   WD 3  366-406    -G---------------QVISTFSTGKIPY--VVKLNPDD-D-KQNILLAGMSDKKIVQWD
   WD 4  410-448    -G---------------QITQEYD-QHLGA--VNTITFVD-N-NRR-FVTSSDDKSLRVWE
   WD 5  449-491    FG------------IPVVIKYISE-PHMHS--MPSISVHP-N-TNW-LAAQSLDNQILIYS
   WD 6  498-538    -L---------------NKKKRFA-GHIVAGYACQVNFSP-D-GRF-VMSGDGEGKCWFWD
   WD 7  542-581    -C---------------KVFRTLK-CHDGV--CIGCEWHPLE-QSK-VATCGWDGLIKYWD

   WD40 Template    TG---------------ECLRTLS-GHTSG--VTSVSFSP-D-GKR-LVSGSEDGTIKVWD