WDRR: WD40 Repeat Recognition
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| JobID: 6CIEE1450337934 Submitted: 2015-12-17 15:38:54 You can bookmark this page for further accessing the result in the future. Results on this server will be retained for 30 days. Job status: [Done] Total run time: 288914551 seconds. [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = sp_Q5R9B8_DCAF6_PONAB (Len=860) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (sp_Q5R9B8_DCAF6_PONAB, Len=860): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MSRGGSCPHLLWDVRKRSLGLEDPSRLRSRYLGRREFIQRLKLEATLNVHDGCVNTICWNDTGEYILSGSDDTKLVISNP 80
WD40-rpts (_________________WD 1________________)
Query 81 YSRKVLTTIRSGHRANIFSAKFLPCTNDKQIVSCSGDGVIFYTNVEQDAETNRQCQFTCHYGTTYEIMTVPNDPYTFLSC 160
WD40-rpts (__________________WD 2__________________) (_________________WD 3________
Query 161 GEDGTVRWFDTRIKTSCTKEDCKDDILINCRRAATSVAICPPIPYYLAVGCSDSSVRIYDRRMLGTRATGNYAGRGTTGM 240
WD40-rpts _________) (_________________WD 4_________________)
Query 241 VARFIPSHLNNKSCRVTSLCYSEDGQEILVSYSSDYIYLFDPKDDTARELKTPSAEERREELRQPPVKRLRLRGDWSDTG 320
WD40-rpts (________________WD 5_______________) (________________________WD 6__
Query 321 PRARPESERERDGEQSPNVSLMQRMSDMLSRWFEEASEVAQSNRGRGRSRPRGGTSQSDISTLPTVPSSPDLEVSETAME 400
WD40-rpts ______________________) (_________________WD 7________________)
Query 401 VDTPAEQFLQPSTSSTMSAQAHSTSSPTESPHSTPLLSSPDSEQRQSVEASGHHTHHQSDNNNEKLSPKPGTGEPVLSLH 480
WD40-rpts
Query 481 YSTEGTTTSTIKLNFTDERSSIASSSRGIGSHCKSEGQEESLVPQSSMQPPEGDSETKAPEESSEDVTKYQEGVSAENPV 560
WD40-rpts (_________________WD 8________________)
Query 561 ENHTNITQSDKFTAKPLDSNSGERNDLNLDSSCGVPEESASPEKAKEPETSDHTSTESATNENNTNPEPQFQTEATGPSA 640
WD40-rpts
Query 641 HEETSTRDSALQDTDDSDDDPVLIPGARYRAGPGDRRSAVARIQEFFRRRKERKEMEELDTLNIRRPLVKMVYKGHRNSR 720
WD40-rpts (_____________
Query 721 TMIKEANFWGANFVMSGSDCGHIFIWDRHTAEHLMLLEADNHVVNCLQPHPFDPILASSGIDYDIKIWSPLEESRIFNRK 800
WD40-rpts _____WD 9_________________) (_________________WD10________________)
Query 801 LADEVITRNELMLEETRNTITVPASFMLRMLASLNHIRADRLEGDRSEGSGQENENEDEE 860
WD40-rpts
 10 WD40-repeats found in QUERY=sp_Q5R9B8_DCAF6_PONAB (Len=860): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 1 41-79 8.99 485.88 1.8e-05 22.5% 53.02 WD 2: Seg 5 83-124 6.98 402.96 0.00023 37.5% 56.69 WD 3: Seg 9 131-170 6.42 379.98 0.00047 22.5% 54.05 WD 4: Seg 13 181-220 6.17 369.47 0.00065 22.5% 48.44 WD 5: Seg 18 245-281 7.96 443.59 6.5e-05 22.5% 42.75 WD 6: Seg 21 290-343 4.87 315.65 0.00347 12.5% 20.95 WD 7: Seg 24 346-384 4.28 291.55 0.00731 15.0% 2.45 WD 8: Seg 29 511-549 2.85 232.21 0.04525 15.0% -17.03 WD 9: Seg 32 707-747 6.21 371.16 0.00062 25.0% 44.27 WD10: Seg 36 751-789 8.53 466.98 3.2e-05 27.5% 56.55Multiple sequence alignment of 10 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 41-79 -LKL--------------EATL-NVHDGCVNTICWND--T-GEYILSGSDDTKLVISN WD 2 83-124 -RKV--------------LTTIRSGHRANIFSAKFLPCTN-DKQIVSCSGDGVIFYTN WD 3 131-170 -TNR--------------QCQF-TCHYGTTYEIMTVP-ND-PYTFLSCGEDGTVRWFD WD 4 181-220 -DCK--------------DDIL-INCRRAATSVAICP--PIPYYLAVGCSDSSVRIYD WD 5 245-281 ---I--------------PSHL-NNKSCRVTSLCYSE--D-GQEILVSYSSDYIYLFD WD 6 290-343 LKTPSAEERREELRQPPVKRLR-LRGDWSDTGPRARP--E-SERERDGEQSPNVSLMQ WD 7 346-384 -SDM--------------LSRW-FEEASEVAQSNRGR--G-RSRPRGGTSQSDISTLP WD 8 511-549 -SHC--------------KSEG-QEESLVPQSSMQPP--E-GDSETKAPEESSEDVTK WD 9 707-747 -PLV--------------KMVY-KGHRNSRTMIKEANFWG-ANFVMSGSDCGHIFIWD WD10 751-789 -AEH--------------LMLL-EADNHVVNCLQPHP--F-DPILASSGIDYDIKIWS WD40 Template TGEC--------------LRTL-SGHTSGVTSVSFSP--D-GKRLVSGSEDGTIKVWD |
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