WDRR: WD40 Repeat Recognition
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| JobID: 695LL1482464276 Submitted: 2016-12-23 11:37:56 You can bookmark this page for further accessing the result in the future. Results on this server will be retained for 30 days. Job status: [Done] Total run time: 256786733 seconds. [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = Gene011739 (Len=718) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (Gene011739, Len=718): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MAVLSSEDGPKVLRAPPVGAEEAKAVLTACAATYSKTGAASPPEAAVKAVQKCTLPLYAKILAWQISLSAETFTEQEPDA 80
WD40-rpts
Query 81 TPELVICEDLEGQLVQILVATEAALGAERVKNCLALLTASRRGLDDTEILDMLAHDELFRSHETYLPWAPASLFWPQLAA 160
WD40-rpts
Query 161 LLAPWVRWDARGAARWRDAALAGAARERYLADAEHDVRRTLVEYYEHYHLYREAPEVFAEQPYFTQLDWIRDKVAAADCA 240
WD40-rpts
Query 241 HFLEDLALVHIEPLPEHIEILKDLFETHCYALDYDHRQFYSLLRVTIEKRRREGVEIKSKIVENWLAEIYDPPIPSFYPM 320
WD40-rpts (______________
Query 321 NEDYWRVEGKKREMSMVEGFDSKTFDLIVRFDCRGKYVATVSTEREEICVWDVSKCQLVRKIVGVTHPINLVPIDEYRCV 400
WD40-rpts _________________WD 1______________________________) (_______________WD 2_____
Query 401 VLCRRELRVYNLDQGTFLVALKGVMNQKMPYYGLHDSTHLVALSRNRMYVNLMNIETGDCVTTFKAGEDRFLNSLLVSGD 480
WD40-rpts __________) (_________________WD 3_________________) (___________________WD
Query 481 GRVLVCGDETQKPFPLLVWSLTSRKLLYDLRIPHHDFVTSKAAITYEGSYVCVVSRELDEPSPNFIVVYDLQSGTLFKKW 560
WD40-rpts 4__________________) (_____________________WD 5____________________) (______
Query 561 KPGCDTVALAISSADGCVVSGLADTRILVWDLVTGNCRVTLRGHVSAPSRLRLARAGGVLLSQDDTCRDLSVRLWDLHTG 640
WD40-rpts __________WD 6________________) (__________________WD 7__________________) (
Query 641 KLIAVYTPPERITSCEVLLGGSVLAVALENCRDILCVQLHGPPGDAVAAGRDLEHDDGPYGDPALQGRTLDVKAAETS 718
WD40-rpts ________________WD 8________________)
 8 WD40-repeats found in QUERY=Gene011739 (Len=718): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 2 306-372 4.62 305.33 0.00477 30.0% 49.19 WD 2: Seg 6 376-411 5.66 348.30 0.00126 12.5% 46.05 WD 3: Seg 10 415-454 7.10 407.97 0.00020 20.0% 56.04 WD 4: Seg 14 458-500 7.18 411.14 0.00018 35.0% 54.49 WD 5: Seg 18 504-550 5.73 351.32 0.00115 20.0% 53.34 WD 6: Seg 22 554-591 7.62 429.52 0.00010 32.5% 57.32 WD 7: Seg 26 595-636 8.43 462.91 3.6e-05 32.5% 52.15 WD 8: Seg 30 640-677 6.25 372.71 0.00059 15.0% 55.38Multiple sequence alignment of 8 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 306-372 LAEIYDPPIPSFYPMNEDYWRVEGKKREMSMV-E--GFDSKTFDLIVRFDCRGKYVATV---STE-----RE---EICVWD WD 2 376-411 -CQL------------------------VRKI-V--GVTHPI-----NLVPIDEYRCVV---LCR------R---ELRVYN WD 3 415-454 -GTF------------------------LVAL-K--GVMNQKMP--YYGLHDSTHLVAL---SRN------R--MYVNLMN WD 4 458-500 -GDC------------------------VTTFKA--GEDRFLNS--LLVSGDGRVLVCG---DET------QKPFPLLVWS WD 5 504-550 -RKL------------------------LYDL-RIPHHDFVTSK--AAITYEGSYVCVV---SRELDEPSPN---FIVVYD WD 6 554-591 -GTL------------------------FKKW-K--PGCDTVAL--AISSADG-CVVSG---LAD------T---RILVWD WD 7 595-636 -GNC------------------------RVTL-R--GHVSAPSR--LRLARAGGVLLSQDDTCRD------L---SVRLWD WD 8 640-677 -GKL------------------------IAVY-T--PPER-ITS--CEVLLGGSVLAVA---LEN------C---RDILCV WD40 Template TGEC------------------------LRTL-S--GHTSGVTS--VSFSPDGKRLVSG---SED------G---TIKVWD |
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