WDRR: WD40 Repeat Recognition
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| JobID: 65ADY1659513969 Submitted: 2022-08-03 16:06:09 You can bookmark this page for further accessing the result in the future. Results on this server will be retained for 30 days. Job status: [Done] Total run time: 79732342 seconds. [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = CsaV3_1G009550 (Len=473) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (CsaV3_1G009550, Len=473): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MGNGGESMALAVCSDRNMGLGITIWDVKTGQTLLHIPTCASPPYGFICLRNEFFVASQTRKEGSVGGGSIFIWSLNKPLP 80
WD40-rpts (____________________WD 1___________________)(_____
Query 81 PVTSYTLETIGPLASTKDGVYLAGGTHSGNIHLWEVGSGELLKLWSGHHKPVKCVLFSWDDSFLITGSSDGMICVWSMIS 160
WD40-rpts _____________WD 2_________________) (_________________WD 3________________)
Query 161 LLDVELVGNSQPIVYCLMEHNSSLTGLLTMSGCSMSIIISSSLDGSLKFWDLMSGMIRGTQAHIEGITAIVLHPTEQVLF 240
WD40-rpts (__________________WD 4_________________) (_________________WD 5_____
Query 241 SGTVDGQIFASRLEFGFDNCITIRENQILAPKGHKGAITALAFSQMYLISASEDCTVCIRDISSQRIIQKLDHKKGRITN 320
WD40-rpts ___________) (______________WD 6______________) (_______________
Query 321 LVAIPRSSLISTSNRKRVSNQSSMSSLDKYPQPANLMKSTIPLFSSIQPLGENLNSIRFTSTSSLNQQILDMKTEGTSAA 400
WD40-rpts __WD 7________________)(___________________WD 8___________________) (___
Query 401 IQMKVETSLERRMWASRMTKEVMDMNNHLQSRLLDMMRIRLFEPAKISSSSKKQKDERDRVAKKREKRTLSFH 473
WD40-rpts __________WD 9____________)
 9 WD40-repeats found in QUERY=CsaV3_1G009550 (Len=473): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 3 30-74 6.65 389.55 0.00035 17.5% 48.74 WD 2: Seg 7 75-115 8.36 460.01 3.9e-05 22.5% 47.31 WD 3: Seg 10 119-157 10.24 537.53 3.5e-06 47.5% 55.39 WD 4: Seg 15 171-211 7.90 440.94 7.1e-05 27.5% 55.49 WD 5: Seg 19 214-252 8.82 479.16 2.2e-05 27.5% 53.70 WD 6: Seg 23 268-301 6.79 395.07 0.00029 30.0% 48.07 WD 7: Seg 26 305-343 7.81 437.20 8.0e-05 7.5% 50.50 WD 8: Seg 29 344-387 5.36 335.89 0.00185 20.0% 38.99 WD 9: Seg 33 397-427 4.15 285.89 0.00871 10.0% 39.44Multiple sequence alignment of 9 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 30-74 -GQTL-LHIPTCASPPYGF-----ICLR--NEFFVASQTRKEGSVGGGSIFIWS WD 2 75-115 LNKPLPPVTSYTLETIGPL-----ASTK--DGVYLAGGTH------SGNIHLWE WD 3 119-157 -GELL-KLWSGHHKPVKCV-----LFSW--DDSFLITGSS------DGMICVWS WD 4 171-211 -QPIV-YCLMEHNSSLTGL-----LTMSGCSMSIIISSSL------DGSLKFWD WD 5 214-252 -SGMI-RGTQAHIEGITAI-----VLHP--TEQVLFSGTV------DGQIFASR WD 6 268-301 ----I-LAPKGHKGAITAL-----AFSQ----MYLISASE------DCTVCIRD WD 7 305-343 -QRII-QKLDHKKGRITNL-----VAIP--RSSLISTSNR------KRVSNQSS WD 8 344-387 -MSSL-DKYPQPANLMKSTIPLFSSIQP--LGENLNSIRF------TSTSSLNQ WD 9 397-427 TSAAI----------QMKV-----ETSL--ERRMWASRMT------KEVMDMNN WD40 Template TGECL-RTLSGHTSGVTSV-----SFSP--DGKRLVSGSE------DGTIKVWD |
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