Input parameters:

  Query = CsaV3_4G006470 (Len=326)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CsaV3_4G006470, Len=326):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MEKAMATFHKGTLCSAWNYSSTRLATASSDGTLVIFDSPHPSSSSTSFTPTSNFKAHEVAITKIVWVPPEYGDSVACICS 80  
WD40-rpts      (________________WD 1_______________)          (__________________WD 2__________

Query       81 DGTSSLWEEVVEDAQPLQWKLCKLFKSNSSQILDLQFGNSSSGLKMIAAFSDGYIKVYELMDPLNLKNWQLQAEFQNVID 160 
WD40-rpts      _______)          (__________________WD 3_________________)                     

Query      161 SISTVRKSSCSSASISWNPHRGEQQSSFVIAFSSNTPQLNSAKVWEFDQAHHRWLPVAELALTAEKGDEVYAVAWAQNIG 240 
WD40-rpts             (_________________WD 4________________)  (______________________WD 5_____

Query      241 RPYEVIAVATQRGIAIWHLGLSPDMDGRLSRERVALLSGHNGEVWEMEWDMGGMTLASTGKDGMVRLWQSNLNGVWHQHA 320 
WD40-rpts      _________________)(_______________________WD 6______________________)           

Query      321 AFEPTS 326 
WD40-rpts            

6 WD40-repeats found in QUERY=CsaV3_4G006470 (Len=326):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-37       6.47  381.80  0.00045       20.0%     46.28
  WD 2:  Seg  4    48-88       7.10  408.05  0.00020       20.0%     52.79
  WD 3:  Seg  8    99-139      7.24  413.90  0.00016       20.0%     56.43
  WD 4:  Seg 14   168-206      2.88  233.65  0.04331       17.5%     29.30
  WD 5:  Seg 17   209-258      5.49  341.38  0.00156       12.5%     57.08
  WD 6:  Seg 21   259-309      8.55  467.76  3.1e-05       32.5%     58.92

Multiple sequence alignment of 6 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-37     ME-----------KAM--AT-----FHKGTL-CSAWNY--S---STRLATASSDGTLVIFD
   WD 2   48-88     -F-----------TPTSNFK-----AHEVAITKIVWVP--P-EYGDSVACICSDGTSSLWE
   WD 3   99-139    -W-----------KLCKLFK-----SNSSQILDLQFGNSSS---GLKMIAAFSDGYIKVYE
   WD 4  168-206    SS-----------CSSASISWNPHRGEQQSSFVIAFSS--N---------TPQLNSAKVWE
   WD 5  209-258    QA----HHRWLPVAELALTA-----EKGDEVYAVAWAQ--NIGRPYEVIAVATQRGIAIWH
   WD 6  259-309    LGLSPDMDGRLSRERVALLS-----GHNGEVWEMEWDM--G---GMTLASTGKDGMVRLWQ

   WD40 Template    TG-----------ECLRTLS-----GHTSGVTSVSFSP--D---GKRLVSGSEDGTIKVWD