Input parameters:

  Query = CmaCh18G001450 (Len=375)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CmaCh18G001450, Len=375):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MGIMEFHQTFHNSDQFSSSSSSSSSCLTTFKGHSSYISSLTLAGKFLYSGSSDKEIRSWRRSPSQEFESNHEEFQNNMVT 80  
WD40-rpts                             (________________WD 1_______________)        (___________

Query       81 AGHGAVKSLVVSSDKLYSAHQDQKIRVWKISNEFDHHQKYTRLATLPTLGDRTARLLMPNNQVQIRRHKKCTWVHHVDTV 160 
WD40-rpts      _______WD 2_________________)                                     (_____________

Query      161 SALALSNDESLLYSVSWDRTLKIWRTSDFKCLESVAGAHNDAINAVAIAGDGDVYTGSTDKRIKVWRKNPDGKRHFLVQT 240 
WD40-rpts      ____WD 3________________)   (_________________WD 4________________)       (_____

Query      241 LEKHSSGINALALAGDGSALFSGACDRSVLVWEKEEEGGLMEYVGMLRGHSKAILCLTVVLDLVCSGSADKTIRIWRRAV 320 
WD40-rpts      ____________WD 5________________)       (________________WD 6_______________)   

Query      321 AGNYVCLRVLEGHNGPVKCLAAGVDRCNQNDRSFVVYSGGLDCDIKAWQISVPLV 375 
WD40-rpts         (____________________WD 7____________________)      

7 WD40-repeats found in QUERY=CmaCh18G001450 (Len=375):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  3    24-60       8.02  446.05  6.1e-05       40.0%     53.30
  WD 2:  Seg  8    69-109      7.04  405.33  0.00021       25.0%     46.06
  WD 3:  Seg 15   147-185      9.02  487.46  1.7e-05       30.0%     52.38
  WD 4:  Seg 19   189-227      7.60  428.44  0.00010       35.0%     52.14
  WD 5:  Seg 23   235-273      9.66  513.53  7.5e-06       32.5%     57.01
  WD 6:  Seg 27   281-317      7.15  409.89  0.00019       30.0%     50.96
  WD 7:  Seg 31   324-369      7.51  424.73  0.00012       35.0%     53.93

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   24-60     -SS---CLTTFKG-HSSYISSLTLA---------GKFLYSGSSDKEIRSWR
   WD 2   69-109    SNHEEFQNNMVTA-GHGAVKSLVVSSD-------K--LYSAHQDQKIRVWK
   WD 3  147-185    -RH---KKCTWVH-HVDTVSALALSND-------ESLLYSVSWDRTLKIWR
   WD 4  189-227    -FK---CLESVAGAHNDAINAVAIAGD-------GD-VYTGSTDKRIKVWR
   WD 5  235-273    -HF---LVQTLEK-HSSGINALALAGD-------GSALFSGACDRSVLVWE
   WD 6  281-317    -ME---YVGMLRG-HSKAILCLTVVLD---------LVCSGSADKTIRIWR
   WD 7  324-369    -YV---CLRVLEG-HNGPVKCLAAGVDRCNQNDRSFVVYSGGLDCDIKAWQ

   WD40 Template    TGE---CLRTLSG-HTSGVTSVSFSPD-------GKRLVSGSEDGTIKVWD