WDRR: WD40 Repeat Recognition
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| JobID: 5QY4Z1659505406 Submitted: 2022-08-03 13:43:26 You can bookmark this page for further accessing the result in the future. Results on this server will be retained for 30 days. Job status: [Done] Total run time: 79744921 seconds. [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = CmaCh18G009950 (Len=844) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (CmaCh18G009950, Len=844): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MSSGGGEVEVKDVFIGAGCNRIVNNVSWGACDLVAFGAQNAVAIFCPKSAQILTTLPGHNASVNCTHWLPSSKFAFRAKH 80
WD40-rpts (________________WD 1________________) (______________________WD 2____
Query 81 LNCHYLLSGDSDGAIHLWEFSLLNQKWRNVLQLPKSHKKGVTCITAHIISETAAIVASSSSDGSVCVWEVSFPSTNEGDC 160
WD40-rpts __________________) (__________________WD 3__________________)
Query 161 TLLLLDTLLVGSKSMVALSLAELPGNANHMVLAMGGLDNKIHLYCGKRTGKFVKACELKGHTDWIRSLDFSLPICKTGEE 240
WD40-rpts (___________________WD 4___________________) (_____________________WD 5___
Query 241 NSIMLVSSSQDRGIRIWKMVLHGSLANMNGGCKKEEISLSSYIQGPIFTSGPSTYQVSLESLLIGHEDWVYSVQWQPPSA 320
WD40-rpts _________________) (_______________________W
Query 321 AETEGVPCYQSESILSASMDKTMMIWKPEKTSGIWMNVVTVGELSHSALGFYGGHWSPNGDSILAHGYGGSFHRWRDVGI 400
WD40-rpts D 6_______________________)(______________________WD 7_____________________)
Query 401 SSGNWKPQKVPSGHFAAVTDISWARSGDYFVSVSHDQTTRIFSPWKNVNSLEGGSWHEIARPQVHGHDINCVTLIQGKGN 480
WD40-rpts (_________________WD 8________________)(________________________WD 9________
Query 481 HRFVSGAEEKVARVFEAPLSFLKTLSHATQQNFVATEDHLVDVQILGANMSALGLSQKPIYVHFSHLCAAANKNPDRSGN 560
WD40-rpts _______________) (_________________WD10_________________) (__________
Query 561 EGLDTLETIPDAVPVVLTEPPIEDQLAWHTLWPESHKLYGHGNELFSLCCDHKGKLVASSCKAQTASVAEIWLWEVGSWK 640
WD40-rpts _______WD11________________) (_________________WD12________________) (_
Query 641 AVGRLQSHSLTITQMEFSRDDSMLLAVSRDRQFSVFKIQRTGSDEIHHELISRQEAHRRIIWSCSWNPFGHEFATGSRDK 720
WD40-rpts ________________WD13________________) (_________________WD14___________
Query 721 TVKLWTVTPDSSVKQLATLSQFKSSVTALSWVGLDPESNGLLAVGMENGLLELWSLSIKRTEGVGSNVVASVVKRLDPFV 800
WD40-rpts _____) (___________________WD15__________________) (_______
Query 801 CHVSSVNRLSWREPEEEIEECRKLQLASCGADHCVRVFEVKVSV 844
WD40-rpts ______________WD16____________________)
 16 WD40-repeats found in QUERY=CmaCh18G009950 (Len=844): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 1 9-46 4.16 286.44 0.00856 15.0% 47.70 WD 2: Seg 5 50-99 7.33 417.54 0.00015 37.5% 56.31 WD 3: Seg 9 108-149 6.78 394.76 0.00030 30.0% 52.87 WD 4: Seg 13 162-205 4.95 319.19 0.00311 20.0% 57.07 WD 5: Seg 17 212-258 6.83 396.85 0.00028 35.0% 54.77 WD 6: Seg 24 296-347 7.27 415.05 0.00016 30.0% 50.06 WD 7: Seg 28 348-396 6.71 391.64 0.00033 20.0% 57.93 WD 8: Seg 32 405-443 8.18 452.41 5.0e-05 30.0% 53.26 WD 9: Seg 36 444-496 6.71 391.71 0.00033 20.0% 50.54 WD10: Seg 41 507-546 5.69 349.76 0.00120 5.0% 37.93 WD11: Seg 45 550-588 6.26 373.20 0.00058 10.0% 44.34 WD12: Seg 48 592-630 6.79 395.15 0.00029 22.5% 39.51 WD13: Seg 52 639-677 8.51 466.24 3.2e-05 25.0% 58.63 WD14: Seg 56 688-726 8.35 459.49 4.0e-05 30.0% 54.34 WD15: Seg 60 733-775 6.35 377.17 0.00051 32.5% 50.41 WD16: Seg 64 793-839 5.37 336.31 0.00183 22.5% 43.17Multiple sequence alignment of 16 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 9-46 EVK-------------DVFIGAGCNRIVNNVS---WG--------A------------CD-------------LVAFGAQNAVAIFC WD 2 50-99 -AQ-------------ILTTLPGHNASVNCTH---WL--------P------------SSKFAFRAKHLNCHYLLSGDSDGAIHLWE WD 3 108-149 -RN-------------VLQLPKSHKKGVTCITAHIIS--------E------------TAA-----------IVASSSSDGSVCVWE WD 4 162-205 -LL-------------LLDTLLVGSKSMVALS---LA---ELPGNA------------NHM-----------VLAMGGLDNKIHLYC WD 5 212-258 -FV-------------KACELKGHTDWIRSLD---FSLPICKTGEE------------NSI-----------MLVSSSQDRGIRIWK WD 6 296-347 QVS-------------LESLLIGHEDWVYSVQ---WQ--------PPSAAETEGVPCYQSE-----------SILSASMDKTMMIWK WD 7 348-396 PEK----TSGIWMNVVTVGELSHSALGFYGGH---WS--------P------------NGD-----------SILAHGYGGSFHRWR WD 8 405-443 -WK-------------PQKVPSGHFAAVTDIS---WA--------R------------SGD-----------YFVSVSHDQTTRIFS WD 9 444-496 PWKNVNSLEGGSWHEIARPQVHGHDINCVTLI---QG--------K------------GNH-----------RFVSGAEEKVARVFE WD10 507-546 HAT-------------QQNFVATEDHLVDVQI---LG--------A------------NMS-----------ALGLSQKPIYVHFSH WD11 550-588 -AA-------------NKNPDRSGNEGLDTLE---TI--------P------------DAV-----------PVVLTEPPIEDQLAW WD12 592-630 -WP-------------ESHKLYGHGNELFSLC---CD--------H------------KGK-----------LVASSCKAQTASVAE WD13 639-677 -WK-------------AVGRLQSHSLTITQME---FS--------R------------DDS-----------MLLAVSRDRQFSVFK WD14 688-726 -HE-------------LISRQEAHRRIIWSCS---WN--------P------------FGH-----------EFATGSRDKTVKLWT WD15 733-775 -VK-------------QLATLSQFKSSVTALS---WV--------G--------LDPESNG-----------LLAVGMENGLLELWS WD16 793-839 -VK-------------RLDPFVCHVSSVNRLS---WR--------E------------PEE---EIEECRKLQLASCGADHCVRVFE WD40 Template TGE-------------CLRTLSGHTSGVTSVS---FS--------P------------DGK-----------RLVSGSEDGTIKVWD |
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