Input parameters:

  Query = CsaV3_3G004360 (Len=314)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CsaV3_3G004360, Len=314):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MEESAQAFKNLHSREYQGHKKKVHSVAWNCTGMKLASGSVDQTARVWHIEPHGHGKVKDVELKGHTDSVDQLCWDPKHSD 80  
WD40-rpts               (_________________WD 1________________)(_____________________WD 2______

Query       81 LIATASGDKTVRLWDARNGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPVHKRKFNYEVNEIAWNMT 160 
WD40-rpts      ______________)   (________________WD 3________________)(__________________WD 4_

Query      161 GEMFFLTTGNGTVEVLAYPSLRPIETLMAHTAGCYCIAIDPVGGYFAVGSADSLVSLWDISQMLCVRTFTKLEWPVRTIS 240 
WD40-rpts      ________________)   (_________________WD 5________________)   (_________________

Query      241 FNHTGEYIASASEDLFIDISNVQTGRTVHQIPCRAAMNSVEWNPKHNLLAYAGDDKNKYQADEGIFRIFGFESP 314 
WD40-rpts      WD 6________________)   (________________WD 7________________)            

7 WD40-repeats found in QUERY=CsaV3_3G004360 (Len=314):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1    10-48       9.64  512.75  7.6e-06       37.5%     54.32
  WD 2:  Seg  5    49-95       7.52  425.29  0.00012       27.5%     56.01
  WD 3:  Seg  9    99-136      7.93  442.08  6.8e-05       20.0%     57.58
  WD 4:  Seg 13   137-177      6.80  395.45  0.00029       12.5%     54.34
  WD 5:  Seg 17   181-219      9.84  521.15  5.9e-06       30.0%     54.30
  WD 6:  Seg 21   223-261      9.36  501.13  1.1e-05       30.0%     58.80
  WD 7:  Seg 25   265-302      7.35  418.23  0.00014       17.5%     57.36

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   10-48     -NL------HSREYQ-GHKKKVHSVAWNCTGM-KLASGSVDQTARVWH
   WD 2   49-95     IEPHGHGKVKDVELK-GHTDSVDQLCWDPKHSDLIATASGDKTVRLWD
   WD 3   99-136    -GK------CSQQAE-LSGE-NINITYKPDGT-HIAVGNRDDELTILD
   WD 4  137-177    VRK------FKPVHKRKFNYEVNEIAWNMTGE-MFFLTTGNGTVEVLA
   WD 5  181-219    -LR------PIETLM-AHTAGCYCIAIDPVGG-YFAVGSADSLVSLWD
   WD 6  223-261    -ML------CVRTFT-KLEWPVRTISFNHTGE-YIASASEDLFIDISN
   WD 7  265-302    -GR------TVHQIP-CRAA-MNSVEWNPKHN-LLAYAGDDKNKYQAD

   WD40 Template    TGE------CLRTLS-GHTSGVTSVSFSPDGK-RLVSGSEDGTIKVWD