Input parameters:

  Query = CsaV3_4G033890 (Len=886)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CsaV3_4G033890, Len=886):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MMNKSVDEDEEEECFYESLDRIASSGSCSTSNSDDDRDSIVNSPNYDSEHPFPIPKFPMAVSNYDIWISEPASVLERRSR 80  
WD40-rpts                                                                                      

Query       81 LLREMGLSGDPSLSRANTALELDHKEKGVGDFGRSVSSDYLTSQQQQPPAIIRSKSDGSADCNRNMSSSQASGSDTNNQF 160 
WD40-rpts                                                                                      

Query      161 VKSRSCKSDGAPSVSFAASQHKPPSGKNCRWADESRSDSLVVNANSDPDPSLMSQNGVNRREVSGDSVCSTSGKVNEEAC 240 
WD40-rpts                                                                      (_______________

Query      241 TIKDLDNGKEFVVNEITEDGMWNKLKEVGTGRQLTMEEFEMCVGHSPIVQELMRRQNVEDGCNDNNDLNANGDTGSSSKL 320 
WD40-rpts      ____WD 1__________________)              (____________WD 2____________)     (___

Query      321 KKKGGWFKSIKSVASTVKGQKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGPERVRVRQYGKSSKELSALYKSQEIQ 400 
WD40-rpts      ______________WD 3________________)(________________WD 4_______________)(_______

Query      401 AHSGSIWTIKFSLDGKYLASAGEDRIIHVWQVVESEKKGDLLMEKPEDGNLSFLFAANESPEPTSLSPNVDSHHEKKRRG 480 
WD40-rpts      __________WD 5________________)          (________________WD 6________________) 

Query      481 RSSISRKSVSLEHVIVPDTVFGLSEKPICSFQGHLDVVLDLSWSKSQHLLSSSMDKTVRLWHLSNNSCLKIFSHSDYVTC 560 
WD40-rpts                              (________________WD 7________________)  (_______________

Query      561 IQFNPIDDRYFISGSLDAKVRIWSIPDHQVVDWSDLHEMVTAACYTPDGKGALVGSYKGSCRLYSTSENKMQQKSEINLQ 640 
WD40-rpts      __WD 8_________________)   (________________WD 9________________)            (__

Query      641 NKKKKSSHKKITGFQFAPGSSSEVLITSADSRIRVVDGVDLVQRFKGFRNTNSQISACLSSNGRYVISASEDSHVYVWKH 720 
WD40-rpts      _______________WD10_________________)   (_________________WD11________________) 

Query      721 EADSRPSRSKGVTVVRSYEHFHCQDVSVAIPWPGMGDTWGLNDDYCGDDNVIENHIDEVSSANHPPSPVEAENGSEDSVL 800 
WD40-rpts        (________________WD12________________)         (_______________WD13___________

Query      801 ASGCTNSPLHGTLSSATNSYFFDRISATWPEEKLILNTRNNRSPHSSMDIASGMFQGSSAWGMVIVTAGLRGEIRTFQNF 880 
WD40-rpts      ___)                                  (_________________WD14_________________)  

Query      881 GFPVKI 886 
WD40-rpts            

14 WD40-repeats found in QUERY=CsaV3_4G033890 (Len=886):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  3   225-267      4.25  290.30  0.00760       12.5%     36.55
  WD 2:  Seg  6   282-311      3.65  265.53  0.01632       12.5%     26.10
  WD 3:  Seg  9   317-355      6.91  400.22  0.00025       15.0%     33.26
  WD 4:  Seg 12   356-392      6.31  375.35  0.00054       20.0%     32.25
  WD 5:  Seg 15   393-431      9.22  495.44  1.3e-05       32.5%     51.76
  WD 6:  Seg 20   442-479      6.69  391.17  0.00033       17.5%     20.39
  WD 7:  Seg 22   505-542      6.88  398.94  0.00026       27.5%     54.67
  WD 8:  Seg 26   545-584      7.67  431.45  9.5e-05       27.5%     54.83
  WD 9:  Seg 30   588-625      7.17  411.01  0.00018       25.0%     56.78
  WD10:  Seg 35   638-677      6.57  386.04  0.00039       20.0%     48.01
  WD11:  Seg 38   681-719      8.16  451.93  5.0e-05       25.0%     57.95
  WD12:  Seg 42   723-760      5.01  321.80  0.00286       12.5%     48.28
  WD13:  Seg 46   770-804      7.44  422.01  0.00013       20.0%     48.24
  WD14:  Seg 50   839-878      5.36  335.92  0.00185       15.0%     24.18

Multiple sequence alignment of 14 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  225-267    GDSVCSTSGKVNEEACTIKDLD-NGKEFVVNEITEDGMWNKLKE
   WD 2  282-311    -------CVGHSPIVQELMRRQ-N---VEDG---CNDNNDLNAN
   WD 3  317-355    -SSKLKKKGGWFKSIKSVASTV-KGQKERRS---SDERDTSSEK
   WD 4  356-392    GG---RRSSSATDDSQDVSFHG-PERVRVRQ---YGKSSKELSA
   WD 5  393-431    -LYKSQEIQAHSGSIWTIKFSL-DGKYLASA---GEDRIIHVWQ
   WD 6  442-479    LME--KPEDGNLSFLFAANESP-EPTSLSPN---VDSHHEKKRR
   WD 7  505-542    -EKPICSFQGHLDVVLDLSWSK-SQ-HLLSS---SMDKTVRLWH
   WD 8  545-584    -NNSCLKIFSHSDYVTCIQFNPIDDRYFISG---SLDAKVRIWS
   WD 9  588-625    -HQVVDWSDLHEM-VTAACYTP-DGKGALVG---SYKGSCRLYS
   WD10  638-677    NLQ-NKKKKSSHKKITGFQFAPGSSSEVLIT---SADSRIRVVD
   WD11  681-719    -LVQRFKGFRNTNSQISACLSS-NGRYVISA---SEDSHVYVWK
   WD12  723-760    -DSRPSRSKGVTVVRSYEHFHC-QDVSVAI----PWPGMGDTWG
   WD13  770-804    -----NVIENHIDEVSSANHPP-SPVEAENG---SEDSVLASGC
   WD14  839-878    RNNRSPHSSMDIASGMFQGSSA-WGMVIVTA---GLRGEIRTFQ

   WD40 Template    TGECLRTLSGHTSGVTSVSFSP-DGKRLVSG---SEDGTIKVWD