WDRR: WD40 Repeat Recognition
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| JobID: 5MFX51659500926 Submitted: 2022-08-03 12:28:46 You can bookmark this page for further accessing the result in the future. Results on this server will be retained for 30 days. Job status: [Done] Total run time: 79749952 seconds. [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = CmaCh13G008290 (Len=1757) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (CmaCh13G008290, Len=1757): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MDRRRPASPVYARQWSGGSSSTGSSSPAMSPAHPQSRLGTSSTIKRAQNVAAKKAAERLAQVMAQTPEDDDEDDDLNFRF 80
WD40-rpts
Query 81 AAPPPPRTHSSYQSVVNSNSTNSFHTISGPRINRSPSPALGRNFVEHVPQVRSTSAGRSSMSVRSTQIVPPSKSSLRTPV 160
WD40-rpts
Query 161 SIPPIEPPSNRNSDRRFTPDIGQVNSKDAGDQREASALRDELDMLQEENENLLEKLRLAEDKREEVEARARMLEKQVATL 240
WD40-rpts
Query 241 GEGVSLEAKLLSRKEAALRQREAALKAAKPTKDSRNEEIAALRSEIENLKDESSAATEQLREAESEAKALRVMTQRMILT 320
WD40-rpts
Query 321 QEEMEEVVLKRCWLARYWGLAVQYGICADIAISKHEYWSSLAPLPFEVVISAGQKAKEEPEGRNDQDRSKLIQDLNDLSG 400
WD40-rpts
Query 401 EGNIESMLSVEMGLRELTSLKTRMIALCSLKHSAVEDATVLALAQHRRPSLVHQSDSKASADPKFSEAFELSEAEAEDVL 480
WD40-rpts
Query 481 FKEAWLTYFWRRAKAYGVDEDVADERLQFWISRSGQPPTSHDAVDVERGLVELRKLGIEQQLWEASRKEIDQSSAFSLSS 560
WD40-rpts
Query 561 HKSAKEEGQANHTRPVSHNSHTTATATATATATTTATATARDRAISSFEQAVDPSFSEKLPTISFPVPKKLLGNHPTLHH 640
WD40-rpts
Query 641 HHHHHLIMLSRAGNVLWMEEDSKEEDSASWTKNNTDTHLTHPASSSVFDNNHQITSLSTFKSMLDVEDDWCINGNALHNH 720
WD40-rpts
Query 721 THHADINDITFSQNFTDPPDNLLLPSADSSSSCSPSSSVFNNIDPSQLRFFLPPTRTFSSLHKPISNNPLDHPFDLGAEF 800
WD40-rpts
Query 801 GFLDVQASNSSTLLNNGGGLLTGFTDLSPTSQMNTPNLCLASQLTENCSGLAGFQSFDDNLGNALLLNRSKLLRPLESFP 880
WD40-rpts
Query 881 SVGAQPTLFQKRAALRKSLADKGSNLGGLSPDGGWFSNRIDGSVGKNEIGDENGKKRKMIYADEFQDTSIDTSRFNYDSD 960
WD40-rpts
Query 961 DFTEHNNSKLDESGRNVVNTSNANSTVTGGDQKGKKKGLPAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDA 1040
WD40-rpts
Query 1041 IEYLKELLQRINDLHNELEFAPPGMALTPSTSFHPLTPTPSSLSSRIKEELCPSSFPSPNGQQPARVEVRVREGRAVNIH 1120
WD40-rpts
Query 1121 MFCSRRPGLLLSTVRALDNLGLDIQQAVISCFNGFAMDIFRAEAGNISHVSIACECKVSCLVDNRVPGSTAAIVGIPEKS 1200
WD40-rpts
Query 1201 AKTKAAHRKLGIPKNGEIQQFILPTSLEVKNMAGPVEENDGTNSKEEQEEALVALIDHRCREVQNLKQRISYYTSQLEEA 1280
WD40-rpts
Query 1281 EKRLHDSESKLARLRRQGNAVSSKDSFRSRAVSVKVEQTVNEGSKPQPYSKPELVIPAVVPKISQNSALAGNGANISNSS 1360
WD40-rpts
Query 1361 SSRAQSSPSHVKNVIKVEGDKNIGNSSLRDSSNTSDRGTKRKLEQQCKEHKELIPLIRSSSSPSQIRCVGSNHICSQHKR 1440
WD40-rpts (___________
Query 1441 KLRSLISCPVNEQLFVTSALDGVVNLWQLQARGSSASLLSSADCVSPKQRRWPEDMVWHPEGNRVFLVYSADGGDSQVSV 1520
WD40-rpts ______WD 1_________________) (___________________WD 2__________________
Query 1521 MNLNKSEGKARVTFLEDKPHFKGIINSIIFLPWDSTSFITGGSDHAVVQWKEKDGENTWKPKALHRNLHSSAVMGVAGMQ 1600
WD40-rpts _) (________________WD 3_______________) (________________WD
Query 1601 QKPIVLSAGADKRILGFDVNVGRTEFKHQIESKCMSILPNPCDFNLFMVQTGTPGKQLRLYDIRLRQTELHAFGWEQKSS 1680
WD40-rpts 4________________) (__________________WD 5_________________) (_______
Query 1681 ESQSALINQAWSPDGLVLTSGSADPVIHLFDIRYNLHKPSQSIRAHQKRVFKAVWLQSLPLLISISSDLNVGLHKTA 1757
WD40-rpts __________WD 6________________) (_________________WD 7________________)
 7 WD40-repeats found in QUERY=CmaCh13G008290 (Len=1757): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 9 1429-1468 7.88 440.34 7.2e-05 20.0% 45.54 WD 2: Seg 13 1479-1522 7.49 424.07 0.00012 12.5% 30.40 WD 3: Seg 17 1535-1571 7.47 423.40 0.00012 20.0% 41.19 WD 4: Seg 21 1581-1618 7.73 433.95 8.8e-05 20.0% 41.67 WD 5: Seg 24 1622-1662 5.58 345.16 0.00139 12.5% 51.45 WD 6: Seg 29 1673-1711 9.26 497.10 1.2e-05 35.0% 47.08 WD 7: Seg 31 1717-1755 7.79 436.58 8.1e-05 15.0% 51.12Multiple sequence alignment of 7 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 1429-1468 -VGSNHICSQHKRKLRSLISCPVNE---QLF----VTSALDGVVNLWQ WD 2 1479-1522 LSSADCVSPKQRRWPEDMVWHP-EG---NRVFLVYSADGGDSQVSVMN WD 3 1535-1571 ----LEDKPHFKGIINSIIFLPWDS---TSF----ITGGSDHAVVQWK WD 4 1581-1618 --PKALHRNLHSSAVMGVAGMQ-QK---PIV----LSAGADKRILGFD WD 5 1622-1662 -GRTEFKHQIESK-CMSILPNP-CDFNLFMV----QTGTPGKQLRLYD WD 6 1673-1711 FG-WEQKSSESQSALINQAWSP-DG---LVL----TSGSADPVIHLFD WD 7 1717-1755 -HKPSQSIRAHQKRVFKAVWLQ-SL---PLL----ISISSDLNVGLHK WD40 Template TGECLRTLSGHTSGVTSVSFSP-DG---KRL----VSGSEDGTIKVWD |
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