WDRR: WD40 Repeat Recognition
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| JobID: 5MDFM1659505208 Submitted: 2022-08-03 13:40:08 You can bookmark this page for further accessing the result in the future. Results on this server will be retained for 30 days. Job status: [Done] Total run time: 79745792 seconds. [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = CmaCh18G008400 (Len=896) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (CmaCh18G008400, Len=896): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MTTKRAYKLQEFVAHSSAVNCLKIGRKSSRVLVTGGEDFKVNLWAIGKPNAILSLTGHTSGIDSVSFDSSEVLVAAGAAS 80
WD40-rpts (__________________WD 1_________________)(__________________WD 2____________
Query 81 GTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVS 160
WD40-rpts ______) (_________________WD 3________________) (_________________WD 4______
Query 161 GGEDNTVKLWDLTAGKLLHDFKCHEGQVQCIDFHPHEFLLATGSADKTVKFWDLETFELIGSAGPETSGVRCLTFNPDGR 240
WD40-rpts __________) (_________________WD 5________________) (________________WD 6___
Query 241 TLLCGLHESLKVFSWEPIRCHDGVEVGWSRLSDLNVHEGKLLGCSYNQNCVGVWVVDITRTEPYAINNVNRLNGRSEPKS 320
WD40-rpts _____________) (________________WD 7________________) (______________
Query 321 SSNLSLQNENNAKANFGGLSVSQTSDPLLKETKTLGRLSVSQNTDVKDPKPLSSTGNGPSTPQRVSSNAGPKANSVSSVA 400
WD40-rpts ___WD 8________________)(_________________WD 9_________________)
Query 401 VPNAVVPKRNSVKATSTFNNPIFNKSDVIPVIVPRTNSRHEQDDSRKDFDVAGRAMPLPRTNSRHEQDDSRKEIDVAGRA 480
WD40-rpts
Query 481 MPLPRTNSRHEQDDSRKELDVAGRAMPLPRTNSRHEQDDSRKELDVAGRAMPLSRTNSRHEQDDSRKELDVAGRAVPAPL 560
WD40-rpts
Query 561 LSKTTDTNRRFPSGRDEVDNSTISILSESRGLKAADMSNIADNRNSLHGIGSIQGASAPQKIVKEERHIGSGKNETETKE 640
WD40-rpts
Query 641 STASYKHEDESQGHKISRDGAFPEATRGGRMRSRVDWEKRERANFSRSTFNASPGRAAALDSFPLNNGRGYRRSPDKETV 720
WD40-rpts
Query 721 APTSDEDIIANILQQHDQFINLMQSRSAKLQAVYRYWERHDIKGAVSAMEKMADHAVAADVISILTDKIEVITLDICSCI 800
WD40-rpts
Query 801 LPVLSSLLESDLDRFLDIAMEMLLKLVRTFGSVIYSTLSATSSVGVNIEAEQRLERCNLCFIELEKVKRCLPALIRKRGS 880
WD40-rpts
Query 881 VAKSAQELNLALQEFQ 896
WD40-rpts
 9 WD40-repeats found in QUERY=CmaCh18G008400 (Len=896): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 1 5-45 7.26 414.73 0.00016 25.0% 55.48 WD 2: Seg 5 46-87 9.73 516.61 6.8e-06 45.0% 55.98 WD 3: Seg 9 91-129 10.17 534.75 3.9e-06 45.0% 56.48 WD 4: Seg 13 133-171 10.86 563.17 1.6e-06 50.0% 56.27 WD 5: Seg 17 175-213 9.35 500.69 1.1e-05 35.0% 55.04 WD 6: Seg 21 217-254 6.95 401.70 0.00024 32.5% 56.38 WD 7: Seg 25 258-295 4.97 320.00 0.00303 17.5% 53.10 WD 8: Seg 29 306-344 5.72 350.95 0.00116 12.5% 43.75 WD 9: Seg 32 345-384 3.69 267.22 0.01549 10.0% 10.91Multiple sequence alignment of 9 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 5-45 RA--YKLQEFVAHSSAVNCLKIGRKSSRVLVTGGEDFKVNLWA WD 2 46-87 IGKPNAILSLTGHTSGIDSVSFD-SSEVLVAAGAASGTIKLWD WD 3 91-129 -A--KIVRTLTGHRSNCISVDFH-PFGEFFASGSLDTNLKIWD WD 4 133-171 -K--GCIHTYKGHTRGVNAIRFT-PDGRWVVSGGEDNTVKLWD WD 5 175-213 -G--KLLHDFKCHEGQVQCIDFH-PHEFLLATGSADKTVKFWD WD 6 217-254 -F--ELIGSAGPETSGVRCLTFN-PDGRTLLCGLHE-SLKVFS WD 7 258-295 -I--RCHDGVEVGWSRLSDLNVH--EGKLLGCSYNQNCVGVWV WD 8 306-344 -I--NNVNRLNGRSEPKSSSNLS-LQNENNAKANFGGLSVSQT WD 9 345-384 SD--PLLKETKTLGRLSVSQNTD-VKDPKPLSSTGNGPSTPQR WD40 Template TG--ECLRTLSGHTSGVTSVSFS-PDGKRLVSGSEDGTIKVWD |
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