WDRR: WD40 Repeat Recognition
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| JobID: 5LS991659462121 Submitted: 2022-08-03 01:42:01 You can bookmark this page for further accessing the result in the future. Results on this server will be retained for 30 days. Job status: [Done] Total run time: 79755048 seconds. [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = CmaCh07G000890 (Len=440) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (CmaCh07G000890, Len=440): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MVLRYSAREEPISDNLLPETASAFASASASASMSLIAGSYERFIWGFKLKPSEPQTLSLTPLFSYPSHLSAIRTLAAAGP 80
WD40-rpts (_________________WD 1________________) (________________WD 2_
Query 81 VAASGGADDTIHLYDLSSASSLGSLHDHSASLTALSFYTPPNLSFPRNLVSAAADGSVCIYDADPFVHLKTVLPHRKAIN 160
WD40-rpts ______________) (___________________WD 3___________________) (______________
Query 161 DLSIHPSGKLALTVGHDECLAMINLVRGKRSFYCRLGKEASLVNFDVGGDKFFMVMEEKVSVHEAEDARLLCEFENKKRV 240
WD40-rpts ___WD 4________________)(_________________WD 5_________________) (____________
Query 241 LCATPCENGILLTGGEGRCVTAWDVKSGKVAYSIEEAHAARVKGIVVLTKNSSGAFSDDDPHIVASASSDGVIRVWDVRM 320
WD40-rpts ____WD 6_______________) (______________________WD 7______________________)(__
Query 321 AIKDKPNPLAEANTKSRLTCLAGSALKSLRRPQVGKNIEGGQCEPKATDNNESAEISNTTERAPLSPALLLVRKPKISVL 400
WD40-rpts _____________WD 8_______________)(______________________WD 9____________________
Query 401 ISLFAQSTPSRFECTVIRVYPIILPFSSVSPVRHLQDLSS 440
WD40-rpts _)
 9 WD40-repeats found in QUERY=CmaCh07G000890 (Len=440): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 2 10-48 8.29 456.96 4.3e-05 15.0% 56.49 WD 2: Seg 6 59-95 6.45 381.19 0.00045 25.0% 47.01 WD 3: Seg 10 99-142 8.45 463.63 3.5e-05 30.0% 56.84 WD 4: Seg 14 146-184 9.22 495.47 1.3e-05 20.0% 57.81 WD 5: Seg 18 185-224 4.89 316.52 0.00337 12.5% 51.36 WD 6: Seg 22 228-264 6.70 391.37 0.00033 15.0% 50.51 WD 7: Seg 26 268-317 5.92 359.14 0.00090 35.0% 46.87 WD 8: Seg 30 318-353 4.77 311.80 0.00390 7.5% 28.06 WD 9: Seg 33 354-402 4.60 304.51 0.00489 7.5% 12.82Multiple sequence alignment of 9 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 10-48 -EP---------ISDNL-LPETASAFAS---------ASASAS-----MS-LIAGSYERFIWGFK WD 2 59-95 -LT---------PLFSY-PSHLSAIRTL-----------AAAG-----PV-AASGGADDTIHLYD WD 3 99-142 -AS---------SLGSL-HDHSASLTAL---------SFYTPPNLSFPRN-LVSAAADGSVCIYD WD 4 146-184 -FV---------HLKTV-LPHRKAINDL---------SIHPSG-----KL-ALTVGHDECLAMIN WD 5 185-224 LVR---------GKRSFYCRLGKEASLV---------NFDVGG-----DK-FFMVM-EEKVSVHE WD 6 228-264 -AR---------LLCEF-ENKKRVL--C---------ATPCEN-----GI-LLTGGEGRCVTAWD WD 7 268-317 -GK---------VAYSIEEAHAARVKGIVVLTKNSSGAFSDDD-----PHIVASASSDGVIRVWD WD 8 318-353 -------------VRMA-IKDKPNPLAE---------ANTKSR-----LT-CLAGSALKSLRRPQ WD 9 354-402 VGKNIEGGQCEPKATDN-NESAEISNTT---------ERAPLS-----PA-LLLVRKPKISVLIS WD40 Template TGE---------CLRTL-SGHTSGVTSV---------SFSPDG-----KR-LVSGSEDGTIKVWD |
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