Input parameters:

  Query = CmaCh14G005720 (Len=326)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CmaCh14G005720, Len=326):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MRPILMKGHERPLTFLKYNRDGDLLFSCAKDHNPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMRLITGSADQTAKLWN 80  
WD40-rpts      (________________WD 1________________)   (_________________WD 2________________)

Query       81 VQTGQQLFSFNFDSPARAVDFSVGDKLAVITTDPFMELPSAIHVKRIARDPSEQTAESVLVLKGPQGRINRAVWGPLNKT 160 
WD40-rpts         (________________WD 3_______________)               (_________________WD 4___

Query      161 IVSAGEDAVIRIWDSETGKLLKESDKETGHKKTITSLTKSSDGSHFITGSLDKSARLWDIRTLTLIKTYVTERPVNAVTM 240 
WD40-rpts      _____________)(____________________WD 5___________________)   (_________________

Query      241 SPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFYDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDPD 320 
WD40-rpts      WD 6_________________)               (_________________WD 7________________)    

Query      321 YFNIKL 326 
WD40-rpts            

7 WD40-repeats found in QUERY=CmaCh14G005720 (Len=326):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-38       8.60  470.01  2.9e-05       25.0%     51.80
  WD 2:  Seg  5    42-80      10.37  542.95  3.0e-06       42.5%     56.68
  WD 3:  Seg  9    84-120      5.30  333.48  0.00199       22.5%     47.26
  WD 4:  Seg 12   136-174      9.21  495.21  1.3e-05       30.0%     59.19
  WD 5:  Seg 16   175-219      8.90  482.34  2.0e-05       30.0%     50.56
  WD 6:  Seg 20   223-262      5.58  344.95  0.00140       22.5%     48.45
  WD 7:  Seg 25   278-316      9.86  522.14  5.7e-06       32.5%     55.95

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-38     MR-----PI--LMKGHERPLTFLKYNR--DGDLLFSCAKDHNPTVWF
   WD 2   42-80     -G-----ERLGTYRGHNGAVWCCDVSR--DSMRLITGSADQTAKLWN
   WD 3   84-120    -G-----QQLFSF-NFDSPARAVDFSV--GDK-LAVITTDPFMELPS
   WD 4  136-174    -A-----ESVLVLKGPQGRINRAVWGP--LNKTIVSAGEDAVIRIWD
   WD 5  175-219    SETGKLLKESDKETGHKKTITSLTKSS--DGSHFITGSLDKSARLWD
   WD 6  223-262    -L-----TLIKTYVTERP-VNAVTMSPLLDHVVLGGGQDASAVTTTD
   WD 7  278-316    -Q-----EEIGGVKGHFGPINALAFNP--DGKSFSSGGEDGYVRLHH

   WD40 Template    TG-----ECLRTLSGHTSGVTSVSFSP--DGKRLVSGSEDGTIKVWD