Input parameters:

  Query = sp_E9Q349_WDR25_MOUSE (Len=535)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (sp_E9Q349_WDR25_MOUSE, Len=535):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MASLVAYDDSDSETEADPARSGDAAGQISDASGMSRPSGMGFASSTVGVTKEGAQHTGNSPNEDPGMQRLPLARLWRSDP 80  
WD40-rpts                                                                                      

Query       81 GSCPSQRLQWPSKEPDTTFPPSEPPRPSLWMSRAPVGHVPLAAACLKPLKPAWDVLKPSHDQSTFESTAGNASSSQRKRG 160 
WD40-rpts                                                                                      

Query      161 EDCVLPYIPKRLRQLQALNPEAGGGKDGEPPGPPAGCAPAPLCVAPTVSEFIQPYLNSQYRETTVPKKVLFHLRGHRGPV 240 
WD40-rpts                               (_________________WD 1________________)  (_____________

Query      241 NSIQWCPVFCKSHMLLSASMDKTFKVWNAVDSGHCLQTYSVHSEAVRAARWSPCGRRILSGGFDFALHLTDLETGTQVFS 320 
WD40-rpts      _____WD 2__________________)    (_________________WD 3________________)(________

Query      321 GQSDFRVTTLKFHPKDHNVFLCGGFSSEIKAWDMRTGKVVKGYKATIQQTLDILFLQEGSEFLSSTDASTRDSADRTIIA 400 
WD40-rpts      __________WD 4__________________)   (____________________WD 5___________________

Query      401 WDFRTAAKISNQIFHERYTCPSLALHPREPVFLAQTNGNYLALFSSVWPYRMSRRRRYEGHKVEGYAVGCECSPCGDLLV 480 
WD40-rpts      _)   (_________________WD 6_________________)      (__________________WD 7______

Query      481 TGSADGRVLMFSFRTASRACTLQGHTQACLGTTYHPVLPSVLGTCSWGGDIKIWH 535 
WD40-rpts      ___________)   (_________________WD 8_________________)

8 WD40-repeats found in QUERY=sp_E9Q349_WDR25_MOUSE (Len=535):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1   186-224      5.39  337.48  0.00176        2.5%     17.94
  WD 2:  Seg  4   227-268      8.61  470.18  2.9e-05       37.5%     54.91
  WD 3:  Seg  8   273-311     10.11  532.08  4.2e-06       37.5%     57.18
  WD 4:  Seg 12   312-353      6.54  384.82  0.00041       30.0%     52.44
  WD 5:  Seg 16   357-402      7.63  429.75  0.00010       25.0%     51.88
  WD 6:  Seg 20   406-445      6.52  384.15  0.00041        7.5%     54.57
  WD 7:  Seg 24   452-492      7.55  426.55  0.00011       30.0%     54.13
  WD 8:  Seg 28   496-535      7.66  430.96  9.7e-05       30.0%     52.83

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  186-224    -KDGEPPGPPAGC-A--PAPLCVAP---T-VSEFIQP-------YLNSQYRETT
   WD 2  227-268    -KKVLFHLRGHRG-P--VNSIQWCPVFCK-SHMLLSA-------SMDKTFKVWN
   WD 3  273-311    -GHCLQTYSVHSE-A--VRAARWSP---C-GRRILSG-------GFDFALHLTD
   WD 4  312-353    LETGTQVFSGQSDFR--VTTLKFHP--KD-HNVFLCG-------GFSSEIKAWD
   WD 5  357-402    -GKVVKGYKATIQ-Q--TLDILFLQ---E-GSEFLSSTDASTRDSADRTIIAWD
   WD 6  406-445    -AAKISNQIFHERYT--CPSLALHP---R-EPVFLAQ-------TNGNYLALFS
   WD 7  452-492    -MSRRRRYEGHKV-EGYAVGCECSP---C-GDLLVTG-------SADGRVLMFS
   WD 8  496-535    -ASRACTLQGHTQ-A--CLGTTYHP---VLPSVLGTC-------SWGGDIKIWH

   WD40 Template    TGECLRTLSGHTS-G--VTSVSFSP---D-GKRLVSG-------SEDGTIKVWD