Input parameters:

  Query = CsaV3_7G027950 (Len=431)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CsaV3_7G027950, Len=431):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MEETPVDEGDTNKDVEVAPALIALHPSENSVAVAVGSDLRVFDLVGNCAVSLVDESGPPYHKDSIRTICYGSKGQLFISA 80  
WD40-rpts          (_________________WD 1________________)         (________________WD 2_______

Query       81 GDDKTVKIWSTESWRCIYNVVSEKRVSAAAISPNGLHVCFADKFGVIWVVDLDGGVDGNQPLVNKKAVSLLSHYCSIITS 160 
WD40-rpts      _________)   (________________WD 3________________)             (_______________

Query      161 LKFSLDGRFLVSADRDFKIRVTMFPTKPVNEAHEIQSFCLGHTDFVSCIAFVSNLQCSHGFLISGSGDSTVRLWDILSGS 240 
WD40-rpts      __WD 4________________)         (___________________WD 5__________________)     

Query      241 LLDTCEIGDKVELLDSKEREGCHSAVTSLCTIADGALVAVAVQSLHGIILLNCDLSNHTLSVVKVVSISEETFIPTSLST 320 
WD40-rpts                                                    (___________________WD 6__________

Query      321 SCSTGYLWMVTGVSSLHNLGHSSLAHVKVMSGFNKDNSTANDVSVVEDDAIPGGTKLLEKLQGGITFDEKVFLAAAEAVK 400 
WD40-rpts      ________)  (________________WD 7________________)     (_________________WD 8____

Query      401 TAMSNLLTKKQYSIEKRDFRKRTRNDRKLKQ 431 
WD40-rpts      ____________)                  

8 WD40-repeats found in QUERY=CsaV3_7G027950 (Len=431):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     5-43       6.33  376.22  0.00053       10.0%     41.32
  WD 2:  Seg  5    53-90       8.72  474.78  2.5e-05       20.0%     43.29
  WD 3:  Seg  8    94-131      7.73  433.80  8.9e-05       22.5%     57.44
  WD 4:  Seg 12   145-183      8.58  469.26  2.9e-05       37.5%     50.32
  WD 5:  Seg 16   193-235      7.73  433.83  8.8e-05       35.0%     51.69
  WD 6:  Seg 23   287-329      6.71  391.90  0.00033       22.5%     44.41
  WD 7:  Seg 27   332-369      5.25  331.49  0.00212       20.0%     49.20
  WD 8:  Seg 31   375-413      7.55  426.66  0.00011       17.5%     54.17

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    5-43     PVDEGD-TNKDVEVAPALIALHPSEN----SVAVA--V-GSDLRVFD
   WD 2   53-90     VDE--S-GPPYHKDSIRTICYGSKGQ----LFISA--GDDKTVKIWS
   WD 3   94-131    -WRCIY-NVVSEKR-VSAAAISPNGL----HVCFA--DKFGVIWVVD
   WD 4  145-183    -KKAVS-LLSHYCSIITSLKFSLDGR----FLVSA--DRDFKIRVTM
   WD 5  193-235    -HEIQS-FCLGHTDFVSCIAFVSNLQCSHGFLISG--SGDSTVRLWD
   WD 6  287-329    GIILLNCDLSNHTLSVVKVVSISEET----FIPTSLSTSCSTGYLWM
   WD 7  332-369    -GVSSL-HNLGHSSLAHVKVMSGFNK----DNSTA--N-DVSVVEDD
   WD 8  375-413    -TKLLE-KLQGGITFDEKVFLAAAEA----VKTAM--SNLLTKKQYS

   WD40 Template    TGECLR-TLSGHTSGVTSVSFSPDGK----RLVSG--SEDGTIKVWD