Input parameters:

  Query = CmaCh14G004860 (Len=192)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CmaCh14G004860, Len=192):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MVPGLGTPIRRGLGCVSTIKWSPSGDYFFAAKLDGTFYLWETNTWTSEQWSTTSGFVTGAIWDPDGRMILLAFSESSVLG 80  
WD40-rpts       (_________________WD 1_________________)(__________________WD 2________________

Query       81 SIHFASKPPSLVAHLLAVDLPEITTLTNSQGIEKIAWDASGERLAVSFKDGDELYNGLIAVYDIKRTPLICPSLIVGAVD 160 
WD40-rpts      _)                 (___________________WD 3___________________)                 

Query      161 FAVPILSYSALMLFLSGGSLGALVLVGDAVWC 192 
WD40-rpts                                      

3 WD40-repeats found in QUERY=CmaCh14G004860 (Len=192):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     2-41       8.28  456.76  4.3e-05       20.0%     46.10
  WD 2:  Seg  4    42-82       5.71  350.36  0.00118       17.5%     56.81
  WD 3:  Seg  9   100-143      4.65  306.66  0.00458       27.5%     48.36

Multiple sequence alignment of 3 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    2-41     VPG-LGTPIRRGLGCVSTIKWSPSGDYFFAAKLD------GTFYLWE
   WD 2   42-82     TNTWTSEQWSTTSGFVTGAIWDPDGRMILLAFSE------SSVLGSI
   WD 3  100-143    LPE-I--TTLTNSQGIEKIAWDASGERLAVSFKDGDELYNGLIAVYD

   WD40 Template    TGE-CLRTLSGHTSGVTSVSFSPDGKRLVSGSED------GTIKVWD