WDRR: WD40 Repeat Recognition
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| JobID: 5HTCL1330990197 Submitted: 2012-03-06 07:29:57 You can bookmark this page for further accessing the result in the future. Results on this server will be retained for 30 days. Job status: [Done] Total run time: 408261796 seconds. [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = 3ZWL_B_PDBID_CHAIN_SEQUENCE (Len=369) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (3ZWL_B_PDBID_CHAIN_SEQUENCE, Len=369): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MGSSHHHHHHSSGENLYFQGSHMKAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSI 80
WD40-rpts (_________________WD 1________________) (________________
Query 81 DVDCFTKYCVTGSADYSIKLWDVSNGQCVATWKSPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTK 160
WD40-rpts _WD 2________________) (___________________WD 3__________________) (_
Query 161 VSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDT 240
WD40-rpts ___________________WD 4___________________)(___________________WD 5_____________
Query 241 NSFLVDVSTLQVLKKYETDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNT 320
WD40-rpts _____) (________________WD 6________________) (_______________
Query 321 VAISPQGTSYASGGEDGFIRLHHFEKSYFDFKYDVEKAAEAKEHMQEAN 369
WD40-rpts __WD 7________________)
 7 WD40-repeats found in QUERY=3ZWL_B_PDBID_CHAIN_SEQUENCE (Len=369): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 2 22-60 9.13 491.72 1.5e-05 30.0% 56.06 WD 2: Seg 6 64-102 10.26 538.46 3.4e-06 45.0% 57.38 WD 3: Seg 10 106-148 6.54 384.91 0.00040 27.5% 58.03 WD 4: Seg 15 159-203 7.56 426.94 0.00011 25.0% 55.63 WD 5: Seg 19 204-246 8.84 479.67 2.1e-05 22.5% 56.16 WD 6: Seg 23 250-287 5.56 344.54 0.00141 10.0% 48.02 WD 7: Seg 28 305-343 9.66 513.82 7.4e-06 32.5% 57.75Multiple sequence alignment of 7 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 22-60 -H---MK-----AIKLTGHERPLTQVKYNKEGDLLFSCSK-----DSSASVWY WD 2 64-102 -G---ER-----LGTLDGHTGTIWSIDVDCFTKYCVTGSA-----DYSIKLWD WD 3 106-148 -G---QC-----VATWKSPVP-VKRVEFSPCGNYFLAILDNVMKNPGSINIYE WD 4 159-203 TK---VSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHK-----DGKISKYD WD 5 204-246 VSNNYEY-----VDSIDLHEKSISDMQFSPDLTYFITSSR-----DTNSFLVD WD 6 250-287 -L---QV-----LKKYETDCP-LNTAVITPLKEFIILGGG-----QEAKDVTT WD 7 305-343 -E---EE-----IGRVQGHFGPLNTVAISPQGTSYASGGE-----DGFIRLHH WD40 Template TG---EC-----LRTLSGHTSGVTSVSFSPDGKRLVSGSE-----DGTIKVWD |
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