Input parameters:

  Query = gi_189473598_gb_ACD99699.1_ (Len=402)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (gi_189473598_gb_ACD99699.1_, Len=402):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MASTPPPPLQPPRRTSRWTIPWERLNYSRNQYREMRLRQYKNYENLTMPRDGLEKECKQVERKDTFYDFHLNTRLVKSTI 80  
WD40-rpts                                           (_____________WD 1____________)            

Query       81 VHFQLRNLLWATSKHDVYLMQNYSVMHWSSLLQRGKEVLNVAGQLAPSQNVRGAMPLSRVQISTMAVKGNLMVAGGFQGE 160 
WD40-rpts                                               (____________________WD 2______________

Query      161 LICKYVDKPGEAFCTNLTGNNNSITNAVDIYQAPNGGIRITTANNDCVVRTFDTERFSLISHFAFPWSVNNTSVSPDGKL 240 
WD40-rpts      ______)   (___________________WD 3__________________)(__________________WD 4____

Query      241 LAVLGDSSDCLIADSQSGKEMARLKGHLDYSFSSAWHPDGRVVATGNQDRTCRVWDVRNMSRSVAVLEGRIGAVRGLRYS 320 
WD40-rpts      _____________)   (_________________WD 5________________)    (_________________WD

Query      321 PDGRFLAASEPADFVHVYDAAAGYADAQEIDLFGEIAGVAFSPAGNNGGGGEALFVSIADRTYGSLLEFHRRRRHGYLDC 400 
WD40-rpts       6________________)   (________________WD 7________________)                    

Query      401 YV 402 
WD40-rpts        

7 WD40-repeats found in QUERY=gi_189473598_gb_ACD99699.1_ (Len=402):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1    38-68       5.45  339.80  0.00164        7.5%     34.06
  WD 2:  Seg  8   122-167      5.72  351.03  0.00116       22.5%     43.45
  WD 3:  Seg 11   171-213      6.62  388.09  0.00037       20.0%     55.54
  WD 4:  Seg 15   214-254      7.86  439.22  7.5e-05       27.5%     57.36
  WD 5:  Seg 19   258-296     10.20  535.94  3.7e-06       35.0%     53.09
  WD 6:  Seg 23   301-339      9.14  492.36  1.4e-05       25.0%     54.48
  WD 7:  Seg 27   343-380      6.96  402.02  0.00024       20.0%     52.57

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   38-68     --------------RQYKNYEN---LTMPRDGL-EKECKQVERKD--TFYD
   WD 2  122-167    AGQ-LAPSQNVRGAMPLSRVQI---STMAVKGN-LMVAGGFQGELICKYVD
   WD 3  171-213    -EA-FCTN----LTGNNNSITNAVDIYQAPNGGIRITTANNDCVV--RTFD
   WD 4  214-254    TERFSLIS----HFAFPWSVNN---TSVSPDGK-LLAVLGDSSDC--LIAD
   WD 5  258-296    -GK-EMAR----LKGHLDYSFS---SAWHPDGR-VVATGNQDRTC--RVWD
   WD 6  301-339    -SR-SVAV----LEGRIGAVRG---LRYSPDGR-FLAASEPADFV--HVYD
   WD 7  343-380    -GY-ADAQ----EIDLFGEIAG---VAFSPAGN-NGGGGE-ALFV--SIAD

   WD40 Template    TGE-CLRT----LSGHTSGVTS---VSFSPDGK-RLVSGSEDGTI--KVWD