Input parameters:

  Query = CsaV3_3G043090 (Len=432)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CsaV3_3G043090, Len=432):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MDVDGGGKRVFQRLGAPSGDSRNQKVCFHWRAGKCSRYPCPYLHRELNGPPHAASNGAANAASKRGHGFASDDSSVSVPR 80  
WD40-rpts      (_____________WD 1____________)         (_________________WD 2_________________)

Query       81 RSPNFSGGSTWGRVHGGGNRIIRKTEKLCNFWVQGNCTFGDKCRYLHSWSLGESFSHLTQLDGHQKVITGITFPSGSDKL 160 
WD40-rpts             (___________________WD 3__________________)(___________________WD 4______

Query      161 YTGSKDETVRVWDCQSGQCMAIINLGGQVGSMIAEGPWVFVGIPNCVKAWNIQTSADLSLSGPVGLVYSLVVGNDLLFAG 240 
WD40-rpts      ____________)   (_______________WD 5______________)  (________________WD 6______

Query      241 TQDGSILAWKFNVATNCFEPAASLSGHTLPVVSLVVGANRLYSGSMDHTIKVWSLESLQCLQTLTDHTSVVMSVLCWEQF 320 
WD40-rpts      _________)       (________________WD 7_______________)   (________________WD 8__

Query      321 LLSCSLDKTIKVWAATESGNLEVTYTQKEDHGLLTLCGMHDLDGKPILLCSCNDNSVRLYDLPSFSERGKIYSKEEIRSI 400 
WD40-rpts      _____________)(_____________________WD 9____________________)   (_______________

Query      401 QAGPGGIFFTGDGTGQVKVWTWLTEQAVAASM 432 
WD40-rpts      _WD10_______________)           

10 WD40-repeats found in QUERY=CsaV3_3G043090 (Len=432):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-31       3.88  274.88  0.01223       12.5%      0.44
  WD 2:  Seg  3    41-80       4.40  296.23  0.00632       20.0%     22.70
  WD 3:  Seg  5    88-130      4.64  306.45  0.00461       15.0%     33.54
  WD 4:  Seg  9   131-173     10.04  529.43  4.5e-06       40.0%     58.04
  WD 5:  Seg 13   177-211      4.42  297.27  0.00612       15.0%     45.13
  WD 6:  Seg 17   214-250      6.78  394.91  0.00030       30.0%     54.04
  WD 7:  Seg 21   258-294      7.67  431.41  9.5e-05       47.5%     51.18
  WD 8:  Seg 25   298-334      7.96  443.52  6.5e-05       47.5%     52.21
  WD 9:  Seg 29   335-381      6.38  378.18  0.00050       20.0%     48.36
  WD10:  Seg 33   385-421      5.97  361.44  0.00084       20.0%     55.63

Multiple sequence alignment of 10 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-31     -----------MDVDGGGKRV---------FQRLGAP-SGD-SRNQKVCFHWR
   WD 2   41-80     -PY------LHRELNGPPHAASN-----GAANAASKR-GHGFASDDSSVSVPR
   WD 3   88-130    -GS------TWGRVHGGGNRIIRKTEKLCNFWVQGN--CTF-GDKCRYLHSWS
   WD 4  131-173    LGE---SFSHLTQLDGHQKVITG-----ITFPSGSDK-LYT-GSKDETVRVWD
   WD 5  177-211    -GQ------CMAIINLGGQVGSM-----IAEGP-----WVF-VGIPNCVKAWN
   WD 6  214-250    -TS------ADLSLSGPVGLVYS-----LVVGND--L-LFA-GTQDGSILAWK
   WD 7  258-294    -FE------PAASLSGHTLPVVS-----LVVGAN--R-LYS-GSMDHTIKVWS
   WD 8  298-334    -LQ------CLQTLTDHTSVVMS-----VLCWEQ--F-LLS-CSLDKTIKVWA
   WD 9  335-381    ATESGNLEVTYTQKEDHGLLTLC-----GMHDLDGKPILLC-SCNDNSVRLYD
   WD10  385-421    -FS------ERGKIYSKEE-IRS-----IQAGPGG-I-FFT-GDGTGQVKVWT

   WD40 Template    TGE------CLRTLSGHTSGVTS-----VSFSPDGKR-LVS-GSEDGTIKVWD