Input parameters:

  Query = CsaV3_3G026240 (Len=914)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CsaV3_3G026240, Len=914):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MPLRLAIKRKLAQRSERVKSVDLHPTEPWILASLYSGTVCIWNYQSQTMVKSFEVTELPVRSAKFIPRKQWVVAGADDMF 80  
WD40-rpts         (_________________WD 1_________________)   (_________________WD 2____________

Query       81 IRVYNYNTMDKIKVFEAHTDYIRCVAVHPNLPYVLSSSDDMLIKLWDWDKGWVCTQIFEGHSHYVMQVTFNPKDTNTFAS 160 
WD40-rpts      ____)   (_________________WD 3________________)(___________________WD 4_________

Query      161 ASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPD 240 
WD40-rpts      __________)(___________________WD 5___________________)   (_________________WD 6

Query      241 LPIIITGSEDGTVRIWHSTTYRLENTLNYGLERVWAIGYMKSSRRVVIGYDEGTIMVKLGREVPIASMDNSGKIIWAKHN 320 
WD40-rpts      ________________)   (_________________WD 7________________)(__________________WD

Query      321 EIQTVNIKSVGADFEVTDGERLPLAVKEMGTCDLYPQNLKHNPNGRFVVVCGDGEYIIYTALAWRNRSFGSALEFVWSAD 400 
WD40-rpts       8_________________)  (________________WD 9________________)                    

Query      401 GEYAVRESTSKIKIFSKNFQEKRSIRPTFSAEHIYGGTLLAMCSNDFICFYDWAECRLIRRIDVTVKNLYWADSGDLLAI 480 
WD40-rpts                                                          (________________WD10_______

Query      481 ASDTSFYILKYNRDAVSSYLDSGRPVDEQGVEDAFELLHEVNERARTGLWVGDCFIYNNSSWRLNYCVGGEVTTMFHLDR 560 
WD40-rpts      _________) (_________________WD11_________________)                             

Query      561 PMYLLGYLASQSRVYLIDKEFNVVGYTLLLSLIEYKTLVMRGDYERANEILPSIPKEHHNSVARFLEARGMTEEALEVAT 640 
WD40-rpts                                                                                      

Query      641 DLDYRFDLAIQLGRLEIAKEIAVEVQSESKWKQLGELAMSIGKLDMAEECLKYAVDYSGLLLLYSSLGDAQGISQLATLA 720 
WD40-rpts                                                                                      

Query      721 KEQGKNNVAFLCLFMLGKLEDCLQLLVESNRIPEAALMARSYLPSKVSEIVAIWRKDLSKVNPKAAESLADPEEYPNLFD 800 
WD40-rpts                                                                                      

Query      801 DWQVALSVESRAAQDRGVFNPAEEYSNLADKPYTTLVEAFRSMQTEGHLENGDIDHEDAEQNGEEEQEKHIEEPNGNESQ 880 
WD40-rpts                                                                                      

Query      881 EEGEGIVVDADSTDGAVLVNGSEADEEWVITAHK 914 
WD40-rpts                                        

11 WD40-repeats found in QUERY=CsaV3_3G026240 (Len=914):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     4-43       6.16  369.30  0.00066       22.5%     52.40
  WD 2:  Seg  5    47-85       7.00  403.77  0.00023       22.5%     56.31
  WD 3:  Seg  9    89-127      8.23  454.57  4.6e-05       27.5%     56.95
  WD 4:  Seg 13   128-171      7.79  436.26  8.2e-05       37.5%     56.58
  WD 5:  Seg 17   172-215      7.90  441.14  7.1e-05       42.5%     49.38
  WD 6:  Seg 21   219-257     10.05  529.72  4.5e-06       45.0%     56.21
  WD 7:  Seg 25   261-299      5.65  347.88  0.00128       25.0%     54.66
  WD 8:  Seg 29   300-340      3.65  265.58  0.01630        7.5%     25.63
  WD 9:  Seg 33   343-380      3.52  260.15  0.01926       12.5%     46.84
  WD10:  Seg 44   453-490      3.00  238.62  0.03724       17.5%     46.70
  WD11:  Seg 48   492-531      5.29  333.09  0.00202       10.0%     30.56

Multiple sequence alignment of 11 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    4-43     RL--A---I-KRKLAQRSERVKSVDLHP-TEPW--ILASLYSGTVCIWN
   WD 2   47-85     -Q--T---M-VKSFEVTELPVRSAKFIP-RKQW--VVAGADDMFIRVYN
   WD 3   89-127    -M--D---K-IKVFEAHTDYIRCVAVHP-NLPY--VLSSSDDMLIKLWD
   WD 4  128-171    WD--KGWVC-TQIFEGHSHYVMQVTFNPKDTNT--FASASLDRTIKIWN
   WD 5  172-215    LGSPD---P-NFTLDAHQKGVNCVDYFT-GGDKPYLITGSDDHTAKVWD
   WD 6  219-257    -K--S---C-VQTLEGHTHNVSAVCFHP-DLPI--IITGSEDGTVRIWH
   WD 7  261-299    -Y--R---L-ENTLNYGLERVWAIGYMK-SSRR--VVIGYDEGTIMVKL
   WD 8  300-340    GR--E---VPIASMDNSGKIIWAKHNEI-QTVN--IKSVGADFEVTDGE
   WD 9  343-380    -P--L---A-VKEMGTCDLYPQNLKHNP-NGRF--VVVCG-DGEYIIYT
   WD10  453-490    WA--E---C--RLIRRIDVTVKNLYWAD-SGDL--LAIASDT-SFYILK
   WD11  492-531    NR--D---A-VSSYLDSGRPVDEQGVED-AFEL--LHEVNERARTGLWV

   WD40 Template    TG--E---C-LRTLSGHTSGVTSVSFSP-DGKR--LVSGSEDGTIKVWD