WDRR: WD40 Repeat Recognition
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| JobID: 5GBHP1659503285 Submitted: 2022-08-03 13:08:05 You can bookmark this page for further accessing the result in the future. Results on this server will be retained for 30 days. Job status: [Done] Total run time: 79748069 seconds. [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = CmaCh15G004900 (Len=537) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (CmaCh15G004900, Len=537): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MEEELGNPVAERILPPAEQEVSNEEDAKIKKYLRGEGANLEVLKDKKLKGQLSVIEDLYGKSAKAAAKVEKWLLPSEGGY 80
WD40-rpts (______________WD 1_____________) (________________WD 2__
Query 81 LEAEGLEKTWRIRQETISHEVDILSRRNQHDIILPALGPYSLDYTLNGRYMAIAGRKGHLALVDMKDLNLIKEFQVKETV 160
WD40-rpts _____________) (_________________WD 3________________) (____________
Query 161 RDVVFLHNELFFAAAQKKYPYIYNRDGTELHCLKEHGSVLRLQFLKNHFLLASINKFGQLHYQDVTTGSMAGVFRTGLGR 240
WD40-rpts ____WD 4_______________) (________________WD 5________________) (____________
Query 241 TDVMQVNPFNGVIATGHSGGSVVMWKPTSSSPLVKMLCHQGPVSALAFHPNGHLMATSGCERKIKLWDLRKFEVLQTLPG 320
WD40-rpts _____WD 6________________) (_________________WD 7________________) (________
Query 321 HAKTLDFSQKGLLACGTGSYVQILGDLAGSQNYTRYMSHSIVKGYQIGKILFRPYEDVLGIGHSMGWSSILIPGSGEPNF 400
WD40-rpts _______WD 8______________) (___________________WD 9__________________)
Query 401 DTWVANPFETSKQRREKEVRSLLDKLPPETIALNPSKIGTVMAVKKKEKKTKKEREAEEESAIDAAKSITMKKKTKGRNK 480
WD40-rpts (_________________WD10________________)
Query 481 PTKREKKKREIFDKSKKPFLQEQIKEEEELSRKRPRLGEEVELPKSLQRFARKKTAT 537
WD40-rpts
 10 WD40-repeats found in QUERY=CmaCh15G004900 (Len=537): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 1 1-33 6.81 395.80 0.00029 17.5% 34.29 WD 2: Seg 6 58-94 5.70 349.92 0.00120 10.0% 38.07 WD 3: Seg 10 106-144 7.35 418.35 0.00014 12.5% 52.94 WD 4: Seg 14 148-184 3.77 270.37 0.01406 7.5% 49.97 WD 5: Seg 18 187-224 6.88 398.96 0.00026 27.5% 57.19 WD 6: Seg 22 228-266 7.87 439.71 7.4e-05 12.5% 55.32 WD 7: Seg 26 270-308 8.98 485.77 1.8e-05 25.0% 56.98 WD 8: Seg 30 312-346 4.99 320.59 0.00297 30.0% 42.40 WD 9: Seg 34 350-392 5.13 326.56 0.00247 15.0% 54.78 WD10: Seg 39 417-455 4.75 310.74 0.00404 12.5% 42.11Multiple sequence alignment of 10 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 1-33 ------MEEEL----GNPVAERILPPAEQEVSNEEDAKIKKYL WD 2 58-94 --LYGKSAKAA----AKVEKWLLPSEGGYLEAEGLEKTWRIRQ WD 3 106-144 RRNQHDIILPA----LGPYSLDYTLNGRYMAIAGRKGHLALVD WD 4 148-184 LNLIKEFQVKE----T-VRDVVFLHNELFFAAAQ-KKYPYIYN WD 5 187-224 GTELHCLKEHG----S-VLRLQFLKNHFLLASINKFGQLHYQD WD 6 228-266 GSMAGVFRTGL----GRTDVMQVNPFNGVIATGHSGGSVVMWK WD 7 270-308 SSPLVKMLCHQ----GPVSALAFHPNGHLMATSGCERKIKLWD WD 8 312-346 FEVLQTLPGH-------AKTLDFSQKG-LLACGTGSYVQILGD WD 9 350-392 SQNYTRYMSHSIVKGYQIGKILFRPYEDVLGIGHSMGWSSILI WD10 417-455 KEVRSLLDKLP----PETIALNPSKIGTVMAVKKKEKKTKKER WD40 Template GECLRTLSGHT----SGVTSVSFSPDGKRLVSGSEDGTIKVWD |
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