Input parameters:

  Query = sp_Q9UJX5_APC4_HUMAN (Len=808)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (sp_Q9UJX5_APC4_HUMAN, Len=808):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MLRFPTCFPSFRVVGEKQLPQEIIFLVWSPKRDLIALANTAGEVLLHRLASFHRVWSFPPNENTGKEVTCLAWRPDGKLL 80  
WD40-rpts                                                      (____________________WD 1_______

Query       81 AFALADTKKIVLCDVEKPESLHSFSVEAPVSCMHWMEVTVESSVLTSFYNAEDESNLLLPKLPTLPKNYSNTSKIFSEEN 160 
WD40-rpts      _____________)                                                                  

Query      161 SDEIIKLLGDVRLNILVLGGSSGFIELYAYGMFKIARVTGIAGTCLALCLSSDLKSLSVVTEVSTNGASEVSYFQLETNL 240 
WD40-rpts                                                                                      

Query      241 LYSFLPEVTRMARKFTHISALLQYINLSLTCMCEAWEEILMQMDSRLTKFVQEKNTTTSVQDEFMHLLLWGKASAELQTL 320 
WD40-rpts                                                                                      

Query      321 LMNQLTVKGLKKLGQSIESSYSSIQKLVISHLQSGSESLLYHLSELKGMASWKQKYEPLGLDAAGIEEAITAVGSFILKA 400 
WD40-rpts                                                                                      

Query      401 NELLQVIDSSMKNFKAFFRWLYVAMLRMTEDHVLPELNKMTQKDITFVAEFLTEHFNEAPDLYNRKGKYFNVERVGQYLK 480 
WD40-rpts                                                                                      

Query      481 DEDDDLVSPPNTEGNQWYDFLQNSSHLKESPLLFPYYPRKSLHFVKRRMENIIDQCLQKPADVIGKSMNQAICIPLYRDT 560 
WD40-rpts                                                                                      

Query      561 RSEDSTRRLFKFPFLWNNKTSNLHYLLFTILEDSLYKMCILRRHTDISQSVSNGLIAIKFGSFTYATTEKVRRSIYSCLD 640 
WD40-rpts                                                                                      

Query      641 AQFYDDETVTVVLKDTVGREGRDRLLVQLPLSLVYNSEDSAEYQFTGTYSTRLDEQCSAIPTRTMHFEKHWRLLESMKAQ 720 
WD40-rpts                                                                                      

Query      721 YVAGNGFRKVSCVLSSNLRHVRVFEMDIDDEWELDESSDEEEEASNKPVKIKEEVLSESEAENQQAGAAALAPEIVIKVE 800 
WD40-rpts                                                                                      

Query      801 KLDPELDS 808 
WD40-rpts              

1 WD40-repeats found in QUERY=sp_Q9UJX5_APC4_HUMAN (Len=808):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  5    49-94       3.62  264.10  0.01705       30.0%     49.40

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   49-94     LASFHRVWSFPPNENTGKEVTCLAWRPDGKLLAFALADTKKIVLCD

   WD40 Template    TGECLRTLS-----GHTSGVTSVSFSPDGKRLVSGSED-GTIKVWD