Input parameters:

  Query = CsaV3_4G026950 (Len=1362)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CsaV3_4G026950, Len=1362):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MALGDLMASRISQSSLAVVSNHLDDCSSSNHDDDGDLISLRRDSEVASSSYANAAVTTATTMVYLPQTIVLCELRHDAFE 80  
WD40-rpts                                                                                      

Query       81 ACLPAGPSDTGLVSKWRPKDRMKTGCVALVLCLNISVDPPDVIKISPCARMECWIDPFSMAPQKALESIGKTLSVQYERW 160 
WD40-rpts                                                                                      

Query      161 QPRARYKVQLDPTVEEVKKLCSTCRKYAKTERVLFHYNGHGVPKPTASGEIWLFNKSYTQYIPLPISDLDSWLKTPSIYV 240 
WD40-rpts                                                                                      

Query      241 FDCSAAGMIVNAFTELHDPSGSTRDCILLAACESHETLPQRAEFPADVFTSCLTTPIKMALRWFCKRSLLRESLDDSLID 320 
WD40-rpts                                                                                      

Query      321 KIPGRQTDRKTLLGELNWIFTAVTDTIAWNVLPHDLFQRLFRQDLLVASLFRNFLLAERIMRSANCSPISHPMLPPTHQH 400 
WD40-rpts                                                                                      

Query      401 HMWDAWDMAAEICLSQLPALVEDPNLEFQPSPFFTEQLTAFEVWLDHGSENKKPPEQLPIVLQVLLSQGHRFRALVLLGR 480 
WD40-rpts                                                                                      

Query      481 FLDMGPWAVDLALSVGIFPYVLKLLQTTTPELRQILVFIWTKILALDKSCQVDLVKDGGHTYFIRFLDSLEAFPEQRAMA 560 
WD40-rpts                                                                                      

Query      561 AFVLAVIVDGHRRGQEACIEANLIHVCLKHLQSSTPNDGQTEPLFLQWLCLCLGKLWEDYIDAQIIGLQADAPAVFSSLL 640 
WD40-rpts                                                                                      

Query      641 AEPQPEVRASAIFALGTLLDVGNDSSRDGVVDDDCDDDEKIRAETSIVGSLLSVVSDGSPLVRAEVAVALARFAFGHNKH 720 
WD40-rpts                                                                                      

Query      721 LKSIAAAYWKPHCNSLLSSLPSLAHIRSSGNAYTNSNQHMPHGSIVSSQIGPLLRFGNENSTLVRDGRVSTSSPLANTGM 800 
WD40-rpts                                                                                      

Query      801 MHGSPLSDDSSQHSDSGVLHEDVVSNGTVNHSRPKPLNNALYSQCVLTMCALANDPSPRIASLGRRVLSIIGIEQVVTKP 880 
WD40-rpts                                                                                      

Query      881 VKASSSGLKPTDGTASSQPPSFAGLARSSSWFDMNGGHLPLTFRTPPVSPPRPSYLTGMRRVCSLEFRPQLMNSPDSGLA 960 
WD40-rpts          (_________________WD 1________________)                                     

Query      961 DPLWGSGGTSGTSERSFLPQSTIYNWSCGHFSKPLLTVADDGEEIFTRREEREKFALERIAKCQHSPVSKLNNNPIASWD 1040
WD40-rpts                                               (_________________WD 2________________)

Query     1041 TKFEMGTKTLLLQPFSPIVVAADENERIRVWNYEEPALLNSFDNHDFPDKGISKLCLVNELDDSLLLAASCDGNIRIWKD 1120
WD40-rpts      (_____________WD 3_____________)   (___________________WD 4___________________) 

Query     1121 YTLKGKQKLVTAFSAIQGHKPGVRSINAVVDWQQQSGYLYASGEISSIMLWDLDKEQLVKSIPSSSDCSISALSASQVHG 1200
WD40-rpts               (___________________WD 5__________________)   (__________________WD 6__

Query     1201 GQLAAGFFDGSVKLYDARIPEMLVCTMRPHVQKVEKVVGIGFQPGLDSSKIVSASQAGDIQFLDIRNQRDRYLTIDAHRG 1280
WD40-rpts      _______________)       (__________________WD 7_________________)    (___________

Query     1281 SLTALAVHRHAPILASGSAKQLIKVFSLDGDQLGTIRYHPTFMPQKIGSVSCLTFHPYEVLLAAGAADACVSIYADDNSQ 1360
WD40-rpts      ______WD 8________________)  (____________________WD 9____________________)     

Query     1361 GR 1362
WD40-rpts        

9 WD40-repeats found in QUERY=CsaV3_4G026950 (Len=1362):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 10   885-923      3.94  277.36  0.01133       10.0%     -17.36
  WD 2:  Seg 12  1002-1040     5.95  360.62  0.00086       20.0%     48.31
  WD 3:  Seg 16  1041-1072     5.60  345.94  0.00135       20.0%     48.28
  WD 4:  Seg 19  1076-1119     6.10  366.83  0.00071       25.0%     47.42
  WD 5:  Seg 23  1130-1172     5.70  350.23  0.00119       27.5%     39.84
  WD 6:  Seg 26  1176-1216     6.28  374.06  0.00057       20.0%     55.05
  WD 7:  Seg 30  1224-1264     5.32  334.48  0.00193       27.5%     46.22
  WD 8:  Seg 34  1269-1307     7.04  405.43  0.00021       25.0%     56.97
  WD 9:  Seg 38  1310-1355     6.56  385.64  0.00040       25.0%     54.36

Multiple sequence alignment of 9 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  885-923    -SSGLKPTDGTAS-------SQPPS--F-----AGL--ARSS----SWFDMNGGHLPLTF
   WD 2 1002-1040   -GEEIFTRREERE-------KFALE--R-----IAK--CQHS----PVSKLNNNPIASWD
   WD 3 1041-1072   TK--------FEM-------GTKTL--L-----LQP--FSPI----VVAADENERIRVWN
   WD 4 1076-1119   -PALLNSFDNHDF-------PDKGI--SKLCLVNEL--DDSL----LLAASCDGNIRIWK
   WD 5 1130-1172   -VTAFSAIQGHKP-------GVRSI--N-----AVV--DWQQQSGYLYASGEISSIMLWD
   WD 6 1176-1216   -EQLVKSIPSSSD-------CSISALSA-----SQV--HGGQ----LAAGFFDGSVKLYD
   WD 7 1224-1264   -VCTMRPHVQKVE-------KVVGI--G-----FQPGLDSSK----IVSASQAGDIQFLD
   WD 8 1269-1307   -RDRYLTIDAHRG-------SLTAL--A-----VHR--HAPI----LASGSAKQLIKVFS
   WD 9 1310-1355   -GDQLGTIRYHPTFMPQKIGSVSCL--T-----FHP--YEVL----LAAGAADACVSIYA

   WD40 Template    TGECLRTLSGHTS-------GVTSV--S-----FSP--DGKR----LVSGSEDGTIKVWD