Input parameters:

  Query = CmaCh08G007280 (Len=301)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CmaCh08G007280, Len=301):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MPAQKIESGHQDTVHDVAMDYYGKRLATASSDQTIKIIGVSNSASQHLATLTGHQGPVWQAAWAHPKFGSLLASCSYDGR 80  
WD40-rpts         (_______________WD 1_______________)     (__________________WD 2_____________

Query       81 VIIWKEGNQNEWTQAHVFYEHKSSVNSIAWAPHEVGLCLACGSSDGNISVFTARPDGGWDTSRIDQAHPLGVTSVSWAPS 160 
WD40-rpts      ____)(_____________________WD 3____________________)      (_____________________

Query      161 SAPGALVGSGFVDPVQKLCSGGCDNTVKVWKPYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASQDGKVIIW 240 
WD40-rpts      ___WD 4_______________________)       (___________________WD 5__________________

Query      241 TVAREGDQWEGKVLNNFQTPVWRVSWSLTGNILAVADGNNAVTLWKEAVDGDWQQVTTVEP 301 
WD40-rpts      )      (_________________WD 6________________)               

6 WD40-repeats found in QUERY=CmaCh08G007280 (Len=301):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     4-39       8.82  479.06  2.2e-05       35.0%     49.18
  WD 2:  Seg  4    45-85       8.02  445.83  6.1e-05       32.5%     56.41
  WD 3:  Seg  8    86-132      7.92  441.94  6.9e-05       35.0%     57.29
  WD 4:  Seg 12   139-191      7.37  419.30  0.00014       42.5%     50.55
  WD 5:  Seg 16   199-241      7.95  443.20  6.6e-05       30.0%     53.82
  WD 6:  Seg 20   248-286      8.40  461.59  3.7e-05       22.5%     46.92

Multiple sequence alignment of 6 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    4-39     ---------QKIESGHQDTVHDVAMDYY----G--------------KRLATASSDQTIKIIG
   WD 2   45-85     -S-----QHLATLTGHQGPVWQAAWAHP--KFG--------------SLLASCSYDGRVIIWK
   WD 3   86-132    EGNQNEWTQAHVFYEHKSSVNSIAWAPH--EVG--------------LCLACGSSDGNISVFT
   WD 4  139-191    -W-----DTSRIDQAHPLGVTSVSWAPS----SAPGALVGSGFVDPVQKLCSGGCDNTVKVWK
   WD 5  199-241    -M-----DCFPALQMHTDWVRDVAWAPNLGLPK--------------STIASASQDGKVIIWT
   WD 6  248-286    QW-----E-GKVLNNFQTPVWRVSWSLT----G--------------NILAVADGNNAVTLWK

   WD40 Template    TG-----ECLRTLSGHTSGVTSVSFSPD----G--------------KRLVSGSEDGTIKVWD