WDRR: WD40 Repeat Recognition
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| JobID: 5BW7Y1659518627 Submitted: 2022-08-03 17:23:47 You can bookmark this page for further accessing the result in the future. Results on this server will be retained for 30 days. Job status: [Done] Total run time: 79729162 seconds. [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = CsaV3_5G002160 (Len=1060) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (CsaV3_5G002160, Len=1060): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MEEMSEDMTLLDATEDAHVQNKVRQDAQENEYVLKPENNNVVESQEMVTPVDGGYSQYYPHEFTDILEGKNLNRCKNNLK 80
WD40-rpts
Query 81 LSDQPECSPHCMDDAGVMVEELTVKNHNGSNLAIIGPSDNRARLLSRHSQWQHLYQLGSGSGSGSSRIDTSYKNHGLAVT 160
WD40-rpts
Query 161 PGLENGGYTSFPEAFAGRASRNDCGEELEEMKAVDNKGGDAQGSIRTKILSKSGFPEFFVKSTLKGKGIIRRGVQLEGFN 240
WD40-rpts
Query 241 VEHRNPKNARIAGGITLASDSSLQHDVKPVIPALYRKSEHKHRGSSLDGISLREWLKVPNQKVNKIKCLYIFRHVVELVE 320
WD40-rpts
Query 321 RSHGRGVLLHDLRPSSFRILTTNQVRYVGTFIQSKTPESLMVKDGQCSDSHLTRKRPLEQGNFLSFGGSPKKQKDAQNMS 400
WD40-rpts
Query 401 LMARHSYFPFKSGTSLETANTRDCNKNVSENYNEHFVEQGGWNKPAGLRAYDSAQTSASDLLEESWYVSPEELMTGCCSA 480
WD40-rpts
Query 481 KSNIFSLGVLLFELLGKFESDGALAAAMSNLRDRILPPSFLADNLKEVGFCLWLLHPEPASRPTAREILESELINGMPSV 560
WD40-rpts
Query 561 PEPELSTSIDEEDAESELLLQFLTSLNEQKQKQASKLVEDIRYLESDIEEVNKRHSSAKPVDKSGLSTVDGRDDLILHGG 640
WD40-rpts
Query 641 YLNSDMCPQVYRISHTNEERIAKNISQLEGAYFSMRSKVDPSENDSAIRTDNDLLRARENCYLPQKDDEMSHSDRLGAFF 720
WD40-rpts
Query 721 DGFCKYSRYSKFEVRGVLRNGDFNSSSNVICSLSFDRDEEYFAAAGVSKKIRIFEFNSVFSDSVDIHYPAVEMFNRSKLS 800
WD40-rpts (_______________WD 1_______________)(______________________WD
Query 801 CICWNGYIKNYLASTDYDGVVKLWDATVGQEVSQFNEHNKRAWSVDFSQVHPTKLASGSDDCSVKLWSINEKNCLGTIRN 880
WD40-rpts 2______________________) (_________________WD 3_________________) (________
Query 881 IANVCCVQFSAHSTHLLAFGSADYRTYCFDLRNTKAPWCVLGGHEKAVSYVKFLDSGTLVSASTDNTLKLWDLNKTNPTG 960
WD40-rpts _________WD 4________________) (________________WD 5________________)
Query 961 LSTKACSLTFSGHTNEKNFVGLSVSNGYIACGSETNEVYAYHRSLPMPMTSYKFGSIDPISGKETEDDNGQFVSSVCWRG 1040
WD40-rpts (_________________WD 6________________) (_________________WD
Query 1041 KSDTVIAANSSGCIKVLQMV 1060
WD40-rpts 7________________)
 7 WD40-repeats found in QUERY=CsaV3_5G002160 (Len=1060): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 11 740-775 6.71 391.75 0.00033 15.0% 47.36 WD 2: Seg 14 776-825 4.86 315.55 0.00348 22.5% 47.06 WD 3: Seg 18 829-868 7.95 443.08 6.6e-05 32.5% 55.08 WD 4: Seg 22 872-910 5.55 344.04 0.00144 30.0% 52.80 WD 5: Seg 25 915-952 7.53 425.76 0.00011 40.0% 46.82 WD 6: Seg 29 964-1002 7.22 412.71 0.00017 27.5% 56.05 WD 7: Seg 33 1020-1058 5.20 329.33 0.00227 20.0% 47.81Multiple sequence alignment of 7 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 740-775 NGD-------------FNSSSNVICSLSFDR-DEE-Y-FAAAGVSKKIRIFE WD 2 776-825 FNSVFSDSVDIHYPAVEMFNRSKLSCICWNG-YIKNY-LASTDYDGVVKLWD WD 3 829-868 -GQEV---------SQFNEHNKRAWSVDFSQVHPT-K-LASGSDDCSVKLWS WD 4 872-910 -KNCL---------GTIRNIAN-VCCVQFSA-HST-HLLAFGSADYRTYCFD WD 5 915-952 -KAPW---------CVLGGHEKAVSYVKFLD-SGT---LVSASTDNTLKLWD WD 6 964-1002 -KACS---------LTFSGHTNEKNFVGLSV-SNG-Y-IACGSETNEVYAYH WD 7 1020-1058 -ISGK---------ETEDDNGQFVSSVCWRG-KSD-T-VIAANSSGCIKVLQ WD40 Template TGECL---------RTLSGHTSGVTSVSFSP-DGK-R-LVSGSEDGTIKVWD |
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